Result of FASTA (omim) for
pF1KB7605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7605, 299 aa
1>>>pF1KB7605 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4864+/-0.000622; mu= -7.4165+/- 0.038
mean_var=340.6473+/-71.485, 0's: 0 Z-trim(114.1): 24 B-trim: 393 in 1/53
Lambda= 0.069490
statistics sampled from 23774 (23795) to 23774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.279), width: 16
Scan time: 5.340
The best scores are: opt bits E(85289)
NP_065080 (OMIM: 606568,615994) leucine zipper tra ( 299) 1852 199.5 6.5e-51
XP_011532140 (OMIM: 606568,615994) PREDICTED: leuc ( 282) 1738 188.1 1.7e-47
XP_016862133 (OMIM: 606568,615994) PREDICTED: leuc ( 282) 1738 188.1 1.7e-47
NP_001263307 (OMIM: 606568,615994) leucine zipper ( 282) 1738 188.1 1.7e-47
XP_006713270 (OMIM: 606568,615994) PREDICTED: leuc ( 260) 1597 173.9 2.9e-43
XP_016862134 (OMIM: 606568,615994) PREDICTED: leuc ( 308) 1569 171.2 2.3e-42
NP_001263308 (OMIM: 606568,615994) leucine zipper ( 256) 1314 145.5 1e-34
>>NP_065080 (OMIM: 606568,615994) leucine zipper transcr (299 aa)
initn: 1852 init1: 1852 opt: 1852 Z-score: 1035.0 bits: 199.5 E(85289): 6.5e-51
Smith-Waterman score: 1852; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
250 260 270 280 290
>>XP_011532140 (OMIM: 606568,615994) PREDICTED: leucine (282 aa)
initn: 1738 init1: 1738 opt: 1738 Z-score: 973.6 bits: 188.1 E(85289): 1.7e-47
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 282 aa overlap (18-299:1-282)
10 20 30 40 50 60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
:::::::::::::::::::::::::::::::::::::::::::
XP_011 MRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
10 20 30 40
70 80 90 100 110 120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
170 180 190 200 210 220
250 260 270 280 290
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
230 240 250 260 270 280
>>XP_016862133 (OMIM: 606568,615994) PREDICTED: leucine (282 aa)
initn: 1738 init1: 1738 opt: 1738 Z-score: 973.6 bits: 188.1 E(85289): 1.7e-47
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 282 aa overlap (18-299:1-282)
10 20 30 40 50 60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
:::::::::::::::::::::::::::::::::::::::::::
XP_016 MRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
10 20 30 40
70 80 90 100 110 120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
170 180 190 200 210 220
250 260 270 280 290
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
230 240 250 260 270 280
>>NP_001263307 (OMIM: 606568,615994) leucine zipper tran (282 aa)
initn: 1738 init1: 1738 opt: 1738 Z-score: 973.6 bits: 188.1 E(85289): 1.7e-47
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 282 aa overlap (18-299:1-282)
10 20 30 40 50 60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
10 20 30 40
70 80 90 100 110 120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
170 180 190 200 210 220
250 260 270 280 290
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
230 240 250 260 270 280
>>XP_006713270 (OMIM: 606568,615994) PREDICTED: leucine (260 aa)
initn: 1597 init1: 1597 opt: 1597 Z-score: 897.6 bits: 173.9 E(85289): 2.9e-43
Smith-Waterman score: 1597; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
:::::::::::::::::::
XP_006 ATAKHDLLRVQEQLHMAEKI
250 260
>>XP_016862134 (OMIM: 606568,615994) PREDICTED: leucine (308 aa)
initn: 1567 init1: 1567 opt: 1569 Z-score: 881.5 bits: 171.2 E(85289): 2.3e-42
Smith-Waterman score: 1569; 97.7% identity (98.9% similar) in 264 aa overlap (36-299:47-308)
10 20 30 40 50 60
pF1KB7 LNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNGLQAVV
::. .. ::::::::::::::::::::::
XP_016 QWINRKGRQRKSIKLYPTHPLVTFPRSWAKFQE--KALLVEDTFTIDEVSEVLNGLQAVV
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB7 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB7 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB7 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
200 210 220 230 240 250
250 260 270 280 290
pF1KB7 DLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
260 270 280 290 300
>>NP_001263308 (OMIM: 606568,615994) leucine zipper tran (256 aa)
initn: 1312 init1: 1312 opt: 1314 Z-score: 744.4 bits: 145.5 E(85289): 1e-34
Smith-Waterman score: 1314; 97.3% identity (98.7% similar) in 224 aa overlap (36-259:34-255)
10 20 30 40 50 60
pF1KB7 LNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNGLQAVV
::. .. ::::::::::::::::::::::
NP_001 QDPGKMGRQRKSIKLYPTHPLVTFPRSWAKFQE--KALLVEDTFTIDEVSEVLNGLQAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 DLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
::::::::::::::
NP_001 DLLRVQEQLHMAEKI
250
299 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:56:42 2016 done: Fri Nov 4 08:56:43 2016
Total Scan time: 5.340 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]