FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7605, 299 aa
  1>>>pF1KB7605 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9741+/-0.00143; mu= -4.8270+/- 0.084
 mean_var=277.7305+/-56.576, 0's: 0 Z-trim(106.3): 34  B-trim: 0 in 0/52
 Lambda= 0.076960
 statistics sampled from 8920 (8927) to 8920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS2731.1 LZTFL1 gene_id:54585|Hs108|chr3         ( 299) 1852 219.0 3.5e-57
CCDS63608.1 LZTFL1 gene_id:54585|Hs108|chr3        ( 282) 1738 206.3 2.1e-53
CCDS63609.1 LZTFL1 gene_id:54585|Hs108|chr3        ( 256) 1314 159.2 2.9e-39


>>CCDS2731.1 LZTFL1 gene_id:54585|Hs108|chr3              (299 aa)
 initn: 1852 init1: 1852 opt: 1852  Z-score: 1140.2  bits: 219.0 E(32554): 3.5e-57
Smith-Waterman score: 1852; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
              250       260       270       280       290         

>>CCDS63608.1 LZTFL1 gene_id:54585|Hs108|chr3             (282 aa)
 initn: 1738 init1: 1738 opt: 1738  Z-score: 1072.1  bits: 206.3 E(32554): 2.1e-53
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 282 aa overlap (18-299:1-282)

               10        20        30        40        50        60
pF1KB7 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS63                  MRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNG
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB7 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKA
            50        60        70        80        90       100   

              130       140       150       160       170       180
pF1KB7 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALD
           110       120       130       140       150       160   

              190       200       210       220       230       240
pF1KB7 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENL
           170       180       190       200       210       220   

              250       260       270       280       290         
pF1KB7 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
           230       240       250       260       270       280  

>>CCDS63609.1 LZTFL1 gene_id:54585|Hs108|chr3             (256 aa)
 initn: 1312 init1: 1312 opt: 1314  Z-score: 818.3  bits: 159.2 E(32554): 2.9e-39
Smith-Waterman score: 1314; 97.3% identity (98.7% similar) in 224 aa overlap (36-259:34-255)

          10        20        30        40        50        60     
pF1KB7 LNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNGLQAVV
                                     ::.  .. ::::::::::::::::::::::
CCDS63 QDPGKMGRQRKSIKLYPTHPLVTFPRSWAKFQE--KALLVEDTFTIDEVSEVLNGLQAVV
            10        20        30          40        50        60 

          70        80        90       100       110       120     
pF1KB7 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSS
              70        80        90       100       110       120 

         130       140       150       160       170       180     
pF1KB7 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NKKPILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKL
             130       140       150       160       170       180 

         190       200       210       220       230       240     
pF1KB7 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKH
             190       200       210       220       230       240 

         250       260       270       280       290         
pF1KB7 DLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPED
       ::::::::::::::                                        
CCDS63 DLLRVQEQLHMAEKI                                       
             250                                             




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:56:41 2016 done: Fri Nov  4 08:56:42 2016
 Total Scan time:  2.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]