Result of FASTA (omim) for
pF1KB7592
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7592, 291 aa
1>>>pF1KB7592 291 - 291 aa - 291 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9822+/-0.000329; mu= 13.5437+/- 0.021
mean_var=90.7705+/-17.650, 0's: 0 Z-trim(117.0): 10 B-trim: 33 in 2/53
Lambda= 0.134618
statistics sampled from 28595 (28601) to 28595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.335), width: 16
Scan time: 7.640
The best scores are: opt bits E(85289)
XP_016868853 (OMIM: 189964,616943) PREDICTED: tran ( 291) 1882 375.1 9e-104
NP_002086 (OMIM: 189964,616943) transcription init ( 291) 1882 375.1 9e-104
XP_016868852 (OMIM: 189964,616943) PREDICTED: tran ( 291) 1882 375.1 9e-104
XP_011542812 (OMIM: 189964,616943) PREDICTED: tran ( 217) 1388 279.0 5.4e-75
XP_011542811 (OMIM: 189964,616943) PREDICTED: tran ( 220) 1382 277.9 1.2e-74
>>XP_016868853 (OMIM: 189964,616943) PREDICTED: transcri (291 aa)
initn: 1882 init1: 1882 opt: 1882 Z-score: 1984.0 bits: 375.1 E(85289): 9e-104
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
250 260 270 280 290
>>NP_002086 (OMIM: 189964,616943) transcription initiati (291 aa)
initn: 1882 init1: 1882 opt: 1882 Z-score: 1984.0 bits: 375.1 E(85289): 9e-104
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
250 260 270 280 290
>>XP_016868852 (OMIM: 189964,616943) PREDICTED: transcri (291 aa)
initn: 1882 init1: 1882 opt: 1882 Z-score: 1984.0 bits: 375.1 E(85289): 9e-104
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
250 260 270 280 290
>>XP_011542812 (OMIM: 189964,616943) PREDICTED: transcri (217 aa)
initn: 1388 init1: 1388 opt: 1388 Z-score: 1467.4 bits: 279.0 E(85289): 5.4e-75
Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
:::::::::::::::::::::::::::::::::::
XP_011 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEESP
190 200 210
250 260 270 280 290
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
>>XP_011542811 (OMIM: 189964,616943) PREDICTED: transcri (220 aa)
initn: 1382 init1: 1382 opt: 1382 Z-score: 1461.0 bits: 277.9 E(85289): 1.2e-74
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
::::::::::::::::::::::::::::::::::
XP_011 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEGWSAMA
190 200 210 220
250 260 270 280 290
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
291 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:54:31 2016 done: Fri Nov 4 08:54:32 2016
Total Scan time: 7.640 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]