FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7592, 291 aa
  1>>>pF1KB7592 291 - 291 aa - 291 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1459+/-0.000816; mu= 12.4768+/- 0.050
 mean_var=89.1573+/-17.361, 0's: 0 Z-trim(109.1): 6  B-trim: 21 in 1/50
 Lambda= 0.135830
 statistics sampled from 10648 (10650) to 10648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.327), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS6078.1 GTF2E2 gene_id:2961|Hs108|chr8          ( 291) 1882 378.3 3.5e-105


>>CCDS6078.1 GTF2E2 gene_id:2961|Hs108|chr8               (291 aa)
 initn: 1882 init1: 1882 opt: 1882  Z-score: 2001.7  bits: 378.3 E(32554): 3.5e-105
Smith-Waterman score: 1882; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)

               10        20        30        40        50        60
pF1KB7 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
              190       200       210       220       230       240

              250       260       270       280       290 
pF1KB7 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
              250       260       270       280       290 




291 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:54:30 2016 done: Fri Nov  4 08:54:30 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]