FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7591, 226 aa
  1>>>pF1KB7591 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6549+/-0.000768; mu= 7.8315+/- 0.047
 mean_var=263.1901+/-52.639, 0's: 0 Z-trim(118.2): 145  B-trim: 0 in 0/52
 Lambda= 0.079057
 statistics sampled from 18903 (19067) to 18903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.586), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS4430.1 PROP1 gene_id:5626|Hs108|chr5           ( 226) 1604 194.6 4.5e-50


>>CCDS4430.1 PROP1 gene_id:5626|Hs108|chr5                (226 aa)
 initn: 1604 init1: 1604 opt: 1604  Z-score: 1012.5  bits: 194.6 E(32554): 4.5e-50
Smith-Waterman score: 1604; 99.1% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KB7 MEAERRRQAEKPKKGRVGSSLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS44 MEAERRRQAEKPKKGRVGSNLLPERHPATGTPTTTVDSSAPPCRRLPGAGGGRSRFSPQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RAKQRKQERSLLQPLAHLSPATFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS44 RAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPS
              130       140       150       160       170       180

              190       200       210       220      
pF1KB7 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TGGAFALSHQSEDWYPTLHPAPAGHLPCPPPPPMLPLSLEPSKSWN
              190       200       210       220      




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:28:29 2016 done: Sat Nov  5 01:28:30 2016
 Total Scan time:  2.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]