FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7589, 224 aa
  1>>>pF1KB7589 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8340+/-0.000727; mu= 5.8682+/- 0.044
 mean_var=186.0681+/-37.340, 0's: 0 Z-trim(116.8): 17  B-trim: 0 in 0/53
 Lambda= 0.094024
 statistics sampled from 17433 (17450) to 17433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.536), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS2527.1 HES6 gene_id:55502|Hs108|chr2           ( 224) 1508 215.4 2.4e-56
CCDS46556.1 HES6 gene_id:55502|Hs108|chr2          ( 222) 1482 211.8 2.8e-55
CCDS63180.1 HES6 gene_id:55502|Hs108|chr2          ( 112)  452 71.8 1.9e-13


>>CCDS2527.1 HES6 gene_id:55502|Hs108|chr2                (224 aa)
 initn: 1508 init1: 1508 opt: 1508  Z-score: 1125.0  bits: 215.4 E(32554): 2.4e-56
Smith-Waterman score: 1508; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB7 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VAAELLNHLLESMPLREGSSFQDLLGDALAGPPRAPGRSGWPAGGAPGSPIPSPPGPGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 VAAELLNHLLESMPLREGSSFQDLLGDALAGPPRAPGRSGWPAGGAPGSPIPSPPGPGDD
              130       140       150       160       170       180

              190       200       210       220    
pF1KB7 LCSDLEEAPEAELSQAPAEGPDLVPAALGSLTTAQIARSVWRPW
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LCSDLEEAPEAELSQAPAEGPDLVPAALGSLTTAQIARSVWRPW
              190       200       210       220    

>>CCDS46556.1 HES6 gene_id:55502|Hs108|chr2               (222 aa)
 initn: 1126 init1: 1126 opt: 1482  Z-score: 1106.0  bits: 211.8 E(32554): 2.8e-55
Smith-Waterman score: 1482; 99.1% identity (99.1% similar) in 224 aa overlap (1-224:1-222)

               10        20        30        40        50        60
pF1KB7 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::  ::
CCDS46 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAE--AK
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB7 LENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDAT
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB7 VAAELLNHLLESMPLREGSSFQDLLGDALAGPPRAPGRSGWPAGGAPGSPIPSPPGPGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VAAELLNHLLESMPLREGSSFQDLLGDALAGPPRAPGRSGWPAGGAPGSPIPSPPGPGDD
      120       130       140       150       160       170        

              190       200       210       220    
pF1KB7 LCSDLEEAPEAELSQAPAEGPDLVPAALGSLTTAQIARSVWRPW
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LCSDLEEAPEAELSQAPAEGPDLVPAALGSLTTAQIARSVWRPW
      180       190       200       210       220  

>>CCDS63180.1 HES6 gene_id:55502|Hs108|chr2               (112 aa)
 initn: 452 init1: 452 opt: 452  Z-score: 354.8  bits: 71.8 E(32554): 1.9e-13
Smith-Waterman score: 452; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KB7 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDAT
       ::::::::::                                                  
CCDS63 LENAEVLELTSASSCRRKRASASLPATSSACTRCTRSCPRARPSTLPSLPSS        
               70        80        90       100       110          




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:53:53 2016 done: Fri Nov  4 08:53:54 2016
 Total Scan time:  2.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]