Result of FASTA (omim) for
pF1KB7586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7586, 288 aa
1>>>pF1KB7586 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8172+/-0.000299; mu= 12.7757+/- 0.019
mean_var=205.5969+/-40.464, 0's: 0 Z-trim(124.4): 157 B-trim: 517 in 1/57
Lambda= 0.089447
statistics sampled from 45877 (46096) to 45877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.54), width: 16
Scan time: 8.940
The best scores are: opt bits E(85289)
NP_115887 (OMIM: 300447) rhox homeobox family memb ( 288) 1998 269.3 6.2e-72
XP_005262541 (OMIM: 300447) PREDICTED: rhox homeob ( 166) 1083 150.9 1.6e-36
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 402 63.5 7.7e-10
NP_644811 (OMIM: 300446) rhox homeobox family memb ( 184) 273 46.4 4.8e-05
XP_011529583 (OMIM: 300446) PREDICTED: rhox homeob ( 212) 273 46.5 5.3e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 273 46.6 5.9e-05
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 273 46.7 6.9e-05
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 266 45.5 9.3e-05
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 261 45.5 0.00028
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 248 43.3 0.0005
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 246 43.1 0.00065
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 242 42.4 0.00081
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 241 42.5 0.0011
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 241 42.5 0.0011
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 241 42.7 0.0014
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 241 42.7 0.0014
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 241 42.7 0.0014
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 241 42.7 0.0014
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 241 42.8 0.0014
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 241 42.8 0.0014
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 241 42.8 0.0014
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 241 42.8 0.0014
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 236 42.0 0.0019
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 237 42.2 0.002
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 234 41.8 0.0026
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 234 41.8 0.0026
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 234 41.9 0.0028
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 234 41.9 0.0029
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 234 41.9 0.0029
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 234 41.9 0.0029
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 227 40.9 0.0048
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 221 39.7 0.0051
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 224 40.4 0.0055
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 224 40.4 0.0057
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 221 39.8 0.0058
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 221 39.9 0.0064
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331) 221 40.0 0.0073
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 219 39.7 0.0077
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 219 39.7 0.0077
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 219 39.7 0.0077
NP_001157150 (OMIM: 602504) short stature homeobox ( 319) 220 39.9 0.0078
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 217 39.3 0.0083
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226) 216 39.2 0.009
>>NP_115887 (OMIM: 300447) rhox homeobox family member 2 (288 aa)
initn: 1998 init1: 1998 opt: 1998 Z-score: 1412.4 bits: 269.3 E(85289): 6.2e-72
Smith-Waterman score: 1998; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
190 200 210 220 230 240
250 260 270 280
pF1KB7 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
250 260 270 280
>>XP_005262541 (OMIM: 300447) PREDICTED: rhox homeobox f (166 aa)
initn: 1083 init1: 1083 opt: 1083 Z-score: 776.9 bits: 150.9 E(85289): 1.6e-36
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
:::::::::::::::::::::::::::::::::::::::
XP_005 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPKGGWQEA
130 140 150 160
190 200 210 220 230 240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
>>NP_703149 (OMIM: 300154) homeobox protein ESX1 [Homo s (406 aa)
initn: 432 init1: 264 opt: 402 Z-score: 297.7 bits: 63.5 E(85289): 7.7e-10
Smith-Waterman score: 409; 33.1% identity (56.4% similar) in 275 aa overlap (20-281:21-271)
10 20 30 40 50
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEK
.: .:..: . : :: . :.::... .:: :: : ..
NP_703 MESLRGYTHSDIGYRSLAVGEDIEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 LKSAGAQGGEEKDGGGEEKDGGGAGVPGHLWE----GDLEGTSGSDGNVEDSDQSEKEPG
. . :. ....: ..:::. : . : : . .: ....:. :
NP_703 VGTEGSVPSDDQD-----REGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQ
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 QQYSRPQGAVG-----GLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARS
:: : : : .: . .. ::: .:::::: .:.. :.:. :.:::
NP_703 TTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAAR
120 130 140 150 160 170
180 190 200 210 220
pF1KB7 MNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPL--FISGM
.:.:: ::.::.::::::.:.::.:: :: ::. .. :: :..:
NP_703 LNLTEDRVQVWFQNRRAKWKRNQRVLMLRN-------------TATADLAHPLDMFLGGA
180 190 200 210 220
230 240 250 260 270 280
pF1KB7 RDDYFWDHSHSSSLCFPM-PPFP-PPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFP
:. . . .:: . : .: :: ::.: : :: :: : :.. .:
NP_703 ---YYAAPALDPALCVHLVPQLPRPPVLPVPPM--PPRPPMVPMPPRP-PIAPMPPMAPV
230 240 250 260 270
pF1KB7 NV
NP_703 PPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPM
280 290 300 310 320 330
>>NP_644811 (OMIM: 300446) rhox homeobox family member 1 (184 aa)
initn: 250 init1: 213 opt: 273 Z-score: 211.5 bits: 46.4 E(85289): 4.8e-05
Smith-Waterman score: 275; 36.9% identity (61.2% similar) in 160 aa overlap (48-202:23-171)
20 30 40 50 60 70
pF1KB7 AVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAG-EKLKSAGAQG--GEEKDGG
: :. :.:.. : . :: : :. . :
NP_644 MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEG
10 20 30 40 50
80 90 100 110 120 130
pF1KB7 GEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQ
: ....: : . :: . :: : .: . : . :.:. : .: : .
NP_644 GVNHENGMNRDGGMIPEG-------GGGNQEPRQQPQPPPEEP---AQAAMEGPQPEN-M
60 70 80 90 100
140 150 160 170 180 190
pF1KB7 QPNVH--AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRH
:: .. :: ::..::: .:.. :.:. ::.::....::: :..::.:.::. :::
NP_644 QPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRH
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB7 QRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPP
:: :: : :
NP_644 QRELMLANELRADPDDCVYIVVD
170 180
>>XP_011529583 (OMIM: 300446) PREDICTED: rhox homeobox f (212 aa)
initn: 250 init1: 213 opt: 273 Z-score: 210.8 bits: 46.5 E(85289): 5.3e-05
Smith-Waterman score: 275; 36.9% identity (61.2% similar) in 160 aa overlap (48-202:51-199)
20 30 40 50 60 70
pF1KB7 AVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAG-EKLKSAGAQG--GEEKDGG
: :. :.:.. : . :: : :. . :
XP_011 VQGRSAPAMARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEG
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB7 GEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQ
: ....: : . :: . :: : .: . : . :.:. : .: : .
XP_011 GVNHENGMNRDGGMIPEG-------GGGNQEPRQQPQPPPEEP---AQAAMEGPQPEN-M
90 100 110 120
140 150 160 170 180 190
pF1KB7 QPNVH--AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRH
:: .. :: ::..::: .:.. :.:. ::.::....::: :..::.:.::. :::
XP_011 QPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRH
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB7 QRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPP
:: :: : :
XP_011 QRELMLANELRADPDDCVYIVVD
190 200 210
>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot (253 aa)
initn: 251 init1: 233 opt: 273 Z-score: 210.0 bits: 46.6 E(85289): 5.9e-05
Smith-Waterman score: 281; 31.7% identity (57.6% similar) in 205 aa overlap (51-253:47-218)
30 40 50 60 70 80
pF1KB7 DEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKDG
:. .:::. ::.. : ..:...: .:
NP_057 PGPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPGARA-EAREGAAREPSG
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB7 GGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA
: .:::.. .:.. :. .: . :. : .
NP_057 G---------------SSGSEAAPQDGECPSPGRGSAAKRKK----------KQRRNRTT
80 90 100 110
150 160 170 180 190
pF1KB7 FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMA-R
:. ::: :::.:.: ..:. :.:..::: .:..: ::.::.:::::.::..::..: :
NP_057 FNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASR
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB7 NMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYF-WDHSHSSSLCFPMPPFPPPSLPLPL
. . . .: . : : .:: ... ::. : : : .::. : :
NP_057 SASLLKSYSQEA---AIEQPVAPR-PTALSPDYLSWTASSPYST---VPPYSPGSSGPAT
180 190 200 210 220
260 270 280
pF1KB7 MLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
NP_057 PGVNMANSIASLRLKAKEFSLHHSQVPTVN
230 240 250
>>NP_115485 (OMIM: 604529) homeobox protein orthopedia [ (325 aa)
initn: 245 init1: 221 opt: 273 Z-score: 208.8 bits: 46.7 E(85289): 6.9e-05
Smith-Waterman score: 273; 30.0% identity (60.6% similar) in 203 aa overlap (58-248:25-224)
30 40 50 60 70 80
pF1KB7 MNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKDGGGAGVP-
: .: . :: .: ::. : . . :
NP_115 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGG--SDPGGHPGDLAPNSDPV
10 20 30 40 50
90 100 110 120 130 140
pF1KB7 --GHLWEG-DLEGTSGSDGNVEDSDQS-EKEPGQQYSRPQGAVGGLEPGNAQQPNVHA-F
. : : :. .... ... : .. .:.:: : . :. . .: . :. .: .. :
NP_115 EGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGG-PNPSQAGQQQGQQKQKRHRTRF
60 70 80 90 100 110
150 160 170 180 190
pF1KB7 TPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMAR--
:: ::.:::: : . ..:. :.:..:: ...:: ::.::.::::::...... .
NP_115 TPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRA
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB7 --NMLPFMAVGQ-PVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLC-FPMPPFPPPSLP
..:: .. : : ..:: : . . : .: : . .. .:.::
NP_115 PGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQA
180 190 200 210 220 230
260 270 280
pF1KB7 LPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
NP_115 MAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSP
240 250 260 270 280 290
>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm (193 aa)
initn: 251 init1: 233 opt: 266 Z-score: 206.4 bits: 45.5 E(85289): 9.3e-05
Smith-Waterman score: 266; 39.3% identity (66.4% similar) in 122 aa overlap (134-253:44-158)
110 120 130 140 150 160
pF1KB7 VEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFL
:. : .:. ::: :::.:.: ..:. :.
XP_016 GHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFV
20 30 40 50 60 70
170 180 190 200 210 220
pF1KB7 RRRLARSMNVTELAVQIWFENRRAKWRRHQRALMA-RNMLPFMAVGQPVMVTAAEAITAP
:..::: .:..: ::.::.:::::.::..::..: :. . . .: . : : .::
XP_016 REELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEA---AIEQPVAP
80 90 100 110 120 130
230 240 250 260 270 280
pF1KB7 LFISGMRDDYF-WDHSHSSSLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVP
... ::. : : : .::. : :
XP_016 R-PTALSPDYLSWTASSPYST---VPPYSPGSSGPATPGVNMANSIASLRLKAKEFSLHH
140 150 160 170 180
pF1KB7 SFTFPNV
XP_016 SQVPTVN
190
>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa)
initn: 272 init1: 219 opt: 261 Z-score: 197.8 bits: 45.5 E(85289): 0.00028
Smith-Waterman score: 275; 28.7% identity (49.1% similar) in 275 aa overlap (20-286:225-479)
10 20 30 40
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPE
:::.:: . . . ::. :..:. :
NP_620 PGGVTHPEERLGVAGGPGSAPAAGGGTGTEDDEEELLE-DEEDEDEEEELLEDDEEELLE
200 210 220 230 240 250
50 60 70 80 90 100
pF1KB7 PEQGTAAGEKLKS-AGAQGGEEKDGGGEEKDGGGAGVPGH---LWEGDLEGTSGSDGNVE
. . : . ..: :. ... :: : . : : :: .: : .:
NP_620 DDARALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGED-SVC
260 270 280 290 300 310
110 120 130 140 150 160
pF1KB7 DSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRR
: :..: : . :. .:: ::.:::: ::. ..:. : :.
NP_620 LSAGSDSEEGLLKRK-------------QRRYRTTFTSYQLEELERAFQKTHYPDVFTRE
320 330 340 350
170 180 190 200 210 220
pF1KB7 RLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAI---TAP
.:: ...:: ::.::.:::::::....: :.. : . :. .: . ..:
NP_620 ELAMRLDLTEARVQVWFQNRRAKWRKREKA-GAQTHPPGLPFPGPLSATHPLSPYLDASP
360 370 380 390 400 410
230 240 250 260 270 280
pF1KB7 LFISGMRDDYFWDHSHSSSLC-FPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVP
. : : . ... :: : :: : :: : : : . : :
NP_620 FPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLP----PSGAPLGLSTFLGAAVFRHP
420 430 440 450 460 470
pF1KB7 SFTFPNV
.: :
NP_620 AFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAA
480 490 500 510 520 530
>>NP_008833 (OMIM: 167420,202650) paired mesoderm homeob (217 aa)
initn: 309 init1: 230 opt: 248 Z-score: 193.3 bits: 43.3 E(85289): 0.0005
Smith-Waterman score: 259; 36.2% identity (59.1% similar) in 149 aa overlap (97-242:71-204)
70 80 90 100 110 120
pF1KB7 GGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVG
::::: .:.:: ..: .. .
NP_008 DLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRK-------
50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRR
:. : .:. ::: :::.:.: ..:. :.:. ::: .:.:: ::.::.:::
NP_008 -------QRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRR
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 AKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHS---HSSSLC
::.::..::..: . .. . :::.: .: : : . .::::
NP_008 AKFRRNERAMLANKNASLLK-SYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYRSSSLP
150 160 170 180 190 200
250 260 270 280
pF1KB7 FPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
NP_008 RCCLHEGLHNGF
210
288 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:51:14 2016 done: Fri Nov 4 08:51:15 2016
Total Scan time: 8.940 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]