FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7586, 288 aa
  1>>>pF1KB7586 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0557+/-0.000748; mu= 11.6152+/- 0.046
 mean_var=208.1044+/-42.509, 0's: 0 Z-trim(116.6): 116  B-trim: 728 in 1/53
 Lambda= 0.088907
 statistics sampled from 17136 (17270) to 17136 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.531), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX        ( 288) 1998 267.7 6.8e-72
CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX      ( 288) 1981 265.6 3.1e-71


>>CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX             (288 aa)
 initn: 1998 init1: 1998 opt: 1998  Z-score: 1404.2  bits: 267.7 E(32554): 6.8e-72
Smith-Waterman score: 1998; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
              190       200       210       220       230       240

              250       260       270       280        
pF1KB7 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
              250       260       270       280        

>>CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX           (288 aa)
 initn: 1981 init1: 1981 opt: 1981  Z-score: 1392.4  bits: 265.6 E(32554): 3.1e-71
Smith-Waterman score: 1981; 99.3% identity (99.7% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS43 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS43 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
              190       200       210       220       230       240

              250       260       270       280        
pF1KB7 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
              250       260       270       280        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:51:12 2016 done: Fri Nov  4 08:51:13 2016
 Total Scan time:  2.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]