FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7582, 287 aa
  1>>>pF1KB7582 287 - 287 aa - 287 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2518+/-0.000331; mu= 7.9605+/- 0.021
 mean_var=140.8671+/-28.003, 0's: 0 Z-trim(119.8): 5  B-trim: 311 in 1/54
 Lambda= 0.108061
 statistics sampled from 34254 (34259) to 34254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.402), width:  16
 Scan time:  7.960

The best scores are:                                      opt bits E(85289)
NP_110386 (OMIM: 616477) nuclear receptor-binding  ( 287) 1879 303.8 2.5e-82
NP_001269334 (OMIM: 616477) nuclear receptor-bindi ( 277) 1631 265.1 1.1e-70
XP_006717873 (OMIM: 616477) PREDICTED: nuclear rec ( 243) 1597 259.8 3.8e-69
NP_001244210 (OMIM: 267000,614184) DIS3-like exonu ( 603)  251 50.2 1.1e-05


>>NP_110386 (OMIM: 616477) nuclear receptor-binding fact  (287 aa)
 initn: 1879 init1: 1879 opt: 1879  Z-score: 1599.0  bits: 303.8 E(85289): 2.5e-82
Smith-Waterman score: 1879; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KB7 MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RDSHMKQLLLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 RDSHMKQLLLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PSTEKCLPEIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 PSTEKCLPEIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 HVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_110 HVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATAS
              190       200       210       220       230       240

              250       260       270       280       
pF1KB7 STWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_110 STWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
              250       260       270       280       

>>NP_001269334 (OMIM: 616477) nuclear receptor-binding f  (277 aa)
 initn: 1631 init1: 1631 opt: 1631  Z-score: 1390.2  bits: 265.1 E(85289): 1.1e-70
Smith-Waterman score: 1631; 100.0% identity (100.0% similar) in 249 aa overlap (39-287:29-277)

       10        20        30        40        50        60        
pF1KB7 NLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQL
                                     ::::::::::::::::::::::::::::::
NP_001   MFPGATTPLPKAAAYPGVYGSNGRTPQPAYLSEAMKLTQSEQAHLSLELQRDSHMKQL
                 10        20        30        40        50        

       70        80        90       100       110       120        
pF1KB7 LLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLP
       60        70        80        90       100       110        

      130       140       150       160       170       180        
pF1KB7 EIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAE
      120       130       140       150       160       170        

      190       200       210       220       230       240        
pF1KB7 NERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAA
      180       190       200       210       220       230        

      250       260       270       280       
pF1KB7 NTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
       :::::::::::::::::::::::::::::::::::::::
NP_001 NTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
      240       250       260       270       

>>XP_006717873 (OMIM: 616477) PREDICTED: nuclear recepto  (243 aa)
 initn: 1597 init1: 1597 opt: 1597  Z-score: 1362.4  bits: 259.8 E(85289): 3.8e-69
Smith-Waterman score: 1597; 100.0% identity (100.0% similar) in 243 aa overlap (45-287:1-243)

           20        30        40        50        60        70    
pF1KB7 SRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLLLIQER
                                     ::::::::::::::::::::::::::::::
XP_006                               MKLTQSEQAHLSLELQRDSHMKQLLLIQER
                                             10        20        30

           80        90       100       110       120       130    
pF1KB7 WKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIF
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KB7 DRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRK
              100       110       120       130       140       150

          200       210       220       230       240       250    
pF1KB7 ENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAANTGKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAANTGKAK
              160       170       180       190       200       210

          260       270       280       
pF1KB7 DIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
       :::::::::::::::::::::::::::::::::
XP_006 DIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
              220       230       240   

>>NP_001244210 (OMIM: 267000,614184) DIS3-like exonuclea  (603 aa)
 initn: 287 init1: 143 opt: 251  Z-score: 222.8  bits: 50.2 E(85289): 1.1e-05
Smith-Waterman score: 261; 54.4% identity (73.3% similar) in 90 aa overlap (87-175:527-601)

         60        70        80        90       100       110      
pF1KB7 LELQRDSHMKQLLLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLS
                                     :::.:::.:::::.::.:::::::.:    
NP_001 AQSMIESPTEKIPAKELPPISPEHSSEEVHQQNADKDGAAHLQASHSPSAEDAEAQ----
        500       510       520       530       540       550      

        120       130       140       150       160        170     
pF1KB7 QKYSPSTEKCLPEIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTI-IEEQATKI
           ::::. ::: .:: :::::: :..:::.:.  :        : ..:: .:::.:..
NP_001 ----PSTEERLPETRGICDRDPDTRLFFLQQQSRVLEA-------KPQNTIRVEEQTTQL
                560       570       580              590       600 

         180       190       200       210       220       230     
pF1KB7 ADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAE
                                                                   
NP_001 QI                                                          
                                                                   




287 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:29:24 2016 done: Sun Nov  6 15:29:25 2016
 Total Scan time:  7.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]