FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7582, 287 aa
  1>>>pF1KB7582 287 - 287 aa - 287 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3052+/-0.000811; mu= 7.4393+/- 0.049
 mean_var=128.7696+/-25.616, 0's: 0 Z-trim(112.0): 10  B-trim: 130 in 1/51
 Lambda= 0.113023
 statistics sampled from 12867 (12870) to 12867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS7268.1 NRBF2 gene_id:29982|Hs108|chr10         ( 287) 1879 316.9 1.1e-86
CCDS60537.1 NRBF2 gene_id:29982|Hs108|chr10        ( 277) 1631 276.5 1.5e-74


>>CCDS7268.1 NRBF2 gene_id:29982|Hs108|chr10              (287 aa)
 initn: 1879 init1: 1879 opt: 1879  Z-score: 1670.1  bits: 316.9 E(32554): 1.1e-86
Smith-Waterman score: 1879; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287)

               10        20        30        40        50        60
pF1KB7 MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RDSHMKQLLLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RDSHMKQLLLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PSTEKCLPEIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PSTEKCLPEIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 HVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HVEFLVAENERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATAS
              190       200       210       220       230       240

              250       260       270       280       
pF1KB7 STWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 STWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
              250       260       270       280       

>>CCDS60537.1 NRBF2 gene_id:29982|Hs108|chr10             (277 aa)
 initn: 1631 init1: 1631 opt: 1631  Z-score: 1451.8  bits: 276.5 E(32554): 1.5e-74
Smith-Waterman score: 1631; 100.0% identity (100.0% similar) in 249 aa overlap (39-287:29-277)

       10        20        30        40        50        60        
pF1KB7 NLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQL
                                     ::::::::::::::::::::::::::::::
CCDS60   MFPGATTPLPKAAAYPGVYGSNGRTPQPAYLSEAMKLTQSEQAHLSLELQRDSHMKQL
                 10        20        30        40        50        

       70        80        90       100       110       120        
pF1KB7 LLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LLIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLP
       60        70        80        90       100       110        

      130       140       150       160       170       180        
pF1KB7 EIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EIQGIFDRDPDTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAE
      120       130       140       150       160       170        

      190       200       210       220       230       240        
pF1KB7 NERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 NERLRKENKQLKAEKARLLKGPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAA
      180       190       200       210       220       230        

      250       260       270       280       
pF1KB7 NTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
       :::::::::::::::::::::::::::::::::::::::
CCDS60 NTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKGFMNN
      240       250       260       270       




287 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:29:23 2016 done: Sun Nov  6 15:29:24 2016
 Total Scan time:  2.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]