FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7575, 216 aa
  1>>>pF1KB7575 216 - 216 aa - 216 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2838+/-0.000898; mu= 9.6722+/- 0.054
 mean_var=90.8977+/-17.980, 0's: 0 Z-trim(108.2): 42  B-trim: 360 in 2/49
 Lambda= 0.134523
 statistics sampled from 10017 (10058) to 10017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS55603.1 ITGB3BP gene_id:23421|Hs108|chr1       ( 216) 1384 278.2 2.7e-75
CCDS30736.1 ITGB3BP gene_id:23421|Hs108|chr1       ( 177) 1097 222.5 1.3e-58


>>CCDS55603.1 ITGB3BP gene_id:23421|Hs108|chr1            (216 aa)
 initn: 1384 init1: 1384 opt: 1384  Z-score: 1465.2  bits: 278.2 E(32554): 2.7e-75
Smith-Waterman score: 1384; 99.5% identity (99.5% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KB7 MPFAPVAQAGVQWHDFRSLQHLLPAFKRFSCLSLGSSWDYSVKRSLKLDGLLEENSFDPS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPFAPVAQARVQWHDFRSLQHLLPAFKRFSCLSLGSSWDYSVKRSLKLDGLLEENSFDPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KITRKKSVITYSPTTGTCQMSLFASPTSSEEQKHRNGLSNEKRKKLNHPSLTESKESTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KITRKKSVITYSPTTGTCQMSLFASPTSSEEQKHRNGLSNEKRKKLNHPSLTESKESTTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DNDEFMMLLSKVEKLSEEIMEIMQNLSSIQALEGSRELENLIGISCASHFLKREMQKTKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DNDEFMMLLSKVEKLSEEIMEIMQNLSSIQALEGSRELENLIGISCASHFLKREMQKTKE
              130       140       150       160       170       180

              190       200       210      
pF1KB7 LMTKVNKQKLFEKSTGLPHKASRHLDSYEFLKAILN
       ::::::::::::::::::::::::::::::::::::
CCDS55 LMTKVNKQKLFEKSTGLPHKASRHLDSYEFLKAILN
              190       200       210      

>>CCDS30736.1 ITGB3BP gene_id:23421|Hs108|chr1            (177 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1165.5  bits: 222.5 E(32554): 1.3e-58
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 175 aa overlap (42-216:3-177)

              20        30        40        50        60        70 
pF1KB7 QWHDFRSLQHLLPAFKRFSCLSLGSSWDYSVKRSLKLDGLLEENSFDPSKITRKKSVITY
                                     ::::::::::::::::::::::::::::::
CCDS30                             MPVKRSLKLDGLLEENSFDPSKITRKKSVITY
                                           10        20        30  

              80        90       100       110       120       130 
pF1KB7 SPTTGTCQMSLFASPTSSEEQKHRNGLSNEKRKKLNHPSLTESKESTTKDNDEFMMLLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SPTTGTCQMSLFASPTSSEEQKHRNGLSNEKRKKLNHPSLTESKESTTKDNDEFMMLLSK
             40        50        60        70        80        90  

             140       150       160       170       180       190 
pF1KB7 VEKLSEEIMEIMQNLSSIQALEGSRELENLIGISCASHFLKREMQKTKELMTKVNKQKLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VEKLSEEIMEIMQNLSSIQALEGSRELENLIGISCASHFLKREMQKTKELMTKVNKQKLF
            100       110       120       130       140       150  

             200       210      
pF1KB7 EKSTGLPHKASRHLDSYEFLKAILN
       :::::::::::::::::::::::::
CCDS30 EKSTGLPHKASRHLDSYEFLKAILN
            160       170       




216 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:35:06 2016 done: Sat Nov  5 01:35:07 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]