FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7572, 280 aa
  1>>>pF1KB7572 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7670+/-0.000855; mu= -1.6215+/- 0.052
 mean_var=317.5972+/-62.125, 0's: 0 Z-trim(118.2): 25  B-trim: 0 in 0/52
 Lambda= 0.071967
 statistics sampled from 19094 (19118) to 19094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.587), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19          ( 280) 1958 215.6 3.2e-56


>>CCDS12292.1 LYL1 gene_id:4066|Hs108|chr19               (280 aa)
 initn: 1958 init1: 1958 opt: 1958  Z-score: 1122.9  bits: 215.6 E(32554): 3.2e-56
Smith-Waterman score: 1958; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MCPPQAQAEVGPTMTEKAEMVCAPSPAPAPPPKPASPGPPQVEEVGHRGGSSPPRLPPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MCPPQAQAEVGPTMTEKAEMVCAPSPAPAPPPKPASPGPPQVEEVGHRGGSSPPRLPPGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVISLGHSRPPGVAMPTTELGTLRPPLLQLSTLGTAPPTLALHYHPHPFLNSVYIGPAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PVISLGHSRPPGVAMPTTELGTLRPPLLQLSTLGTAPPTLALHYHPHPFLNSVYIGPAGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FSIFPSSRLKRRPSHCELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FSIFPSSRLKRRPSHCELDLAEGHQPQKVARRVFTNSRERWRQQNVNGAFAELRKLLPTH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSG
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 RRAEAAARSQPAPPADPDGSPGGAARPIKMEQTALSPEVR
       ::::::::::::::::::::::::::::::::::::::::
CCDS12 RRAEAAARSQPAPPADPDGSPGGAARPIKMEQTALSPEVR
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:48:16 2016 done: Fri Nov  4 08:48:16 2016
 Total Scan time:  2.800 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]