Result of FASTA (omim) for
pF1KB7570
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7570, 279 aa
1>>>pF1KB7570 279 - 279 aa - 279 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0328+/-0.000322; mu= 5.4873+/- 0.020
mean_var=206.6712+/-42.251, 0's: 0 Z-trim(123.0): 242 B-trim: 2086 in 1/60
Lambda= 0.089214
statistics sampled from 41805 (42101) to 41805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.494), width: 16
Scan time: 8.570
The best scores are: opt bits E(85289)
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 1868 252.0 9.2e-67
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 1444 197.4 2.2e-50
XP_011541346 (OMIM: 604823) PREDICTED: homeobox pr ( 134) 913 128.8 5.4e-30
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 556 83.1 5.9e-16
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 298 49.9 5.5e-06
NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488) 298 50.2 9.3e-06
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 295 49.7 1e-05
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 292 49.2 1.2e-05
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 282 47.9 2.7e-05
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 275 47.0 4.9e-05
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 274 46.8 5e-05
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 270 46.1 5.1e-05
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 270 46.1 5.1e-05
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 272 46.5 5.7e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 274 47.0 7.4e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 274 47.0 7.4e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 274 47.0 7.4e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 274 47.0 7.4e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 274 47.0 7.4e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 274 47.0 7.4e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 274 47.0 7.4e-05
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 269 46.3 9.3e-05
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 267 46.0 0.00011
NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 265 45.7 0.00012
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 262 45.3 0.00015
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 262 45.3 0.00015
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 258 44.6 0.00017
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 256 44.3 0.00018
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 256 44.3 0.00018
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 261 45.3 0.0002
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 262 45.4 0.0002
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 260 45.1 0.00022
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 254 44.2 0.0003
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 254 44.3 0.00036
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 252 44.1 0.00045
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 252 44.1 0.00045
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 252 44.2 0.00051
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 252 44.2 0.00051
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 252 44.2 0.00051
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 252 44.2 0.00051
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 252 44.2 0.00051
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 252 44.2 0.00051
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 249 43.6 0.00052
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 249 43.7 0.00052
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 248 43.5 0.00055
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 248 43.6 0.00061
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 247 43.4 0.00062
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 252 44.3 0.00063
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 252 44.3 0.00063
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 252 44.3 0.00063
>>NP_003649 (OMIM: 604823) homeobox protein BarH-like 2 (279 aa)
initn: 1868 init1: 1868 opt: 1868 Z-score: 1319.6 bits: 252.0 E(85289): 9.2e-67
Smith-Waterman score: 1868; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
190 200 210 220 230 240
250 260 270
pF1KB7 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
:::::::::::::::::::::::::::::::::::::::
NP_003 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
250 260 270
>>XP_011541345 (OMIM: 604823) PREDICTED: homeobox protei (233 aa)
initn: 1444 init1: 1444 opt: 1444 Z-score: 1025.7 bits: 197.4 E(85289): 2.2e-50
Smith-Waterman score: 1444; 99.5% identity (100.0% similar) in 218 aa overlap (62-279:16-233)
40 50 60 70 80 90
pF1KB7 SKETCDYFEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATP
.:::::::::::::::::::::::::::::
XP_011 MHINCLEDRMSERKVSGSPSLRAYPLLSVITRQPTVISHLVPATP
10 20 30 40
100 110 120 130 140 150
pF1KB7 GIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKK
50 60 70 80 90 100
160 170 180 190 200 210
pF1KB7 FQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNS
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB7 IPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIP
170 180 190 200 210 220
pF1KB7 SSEPPPLS
::::::::
XP_011 SSEPPPLS
230
>>XP_011541346 (OMIM: 604823) PREDICTED: homeobox protei (134 aa)
initn: 913 init1: 913 opt: 913 Z-score: 659.4 bits: 128.8 E(85289): 5.4e-30
Smith-Waterman score: 913; 100.0% identity (100.0% similar) in 134 aa overlap (146-279:1-134)
120 130 140 150 160 170
pF1KB7 LASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQL
::::::::::::::::::::::::::::::
XP_011 MGLEKKFQKQKYLSTPDRLDLAQSLGLTQL
10 20 30
180 190 200 210 220 230
pF1KB7 QVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLE
40 50 60 70 80 90
240 250 260 270
pF1KB7 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
100 110 120 130
>>NP_067545 (OMIM: 603260) homeobox protein BarH-like 1 (254 aa)
initn: 612 init1: 407 opt: 556 Z-score: 407.5 bits: 83.1 E(85289): 5.9e-16
Smith-Waterman score: 556; 45.6% identity (65.8% similar) in 237 aa overlap (21-242:25-253)
10 20 30 40
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKE----------TCDYFEKLSLYS
::..:::.:::.. . .: ..
NP_067 MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 VCPSLVVRPKPLHSCTGSPSLRA---YPLLSVITRQPTVISHLVPATPGIAQALSCHQVT
: :..:: : . . : .:: . . : :. : ::. : . ..
NP_067 VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCS--GLSSALLAAGPGLPGAAGAPHLP
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 EAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDR
.. . :. :.. .: : . :: :::::.:::::::::::.:.::::::::::
NP_067 LELQLR---GKLEAAGPGE---PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 LDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQ-EAPTKPKGRPKKNSIPTSEEIEAEE
.:::.::::.:::::::::::::::::.::.:: :.:::::::::::::::::.. .:
NP_067 IDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQE
180 190 200 210 220 230
230 240 250 260 270
pF1KB7 KMNSQAQGQE-QLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
. .. . : :::. ..:
NP_067 RAKDAEKPAEVPGEPSDRSRED
240 250
>>NP_001091639 (OMIM: 611074) brain-specific homeobox pr (233 aa)
initn: 306 init1: 260 opt: 298 Z-score: 228.5 bits: 49.9 E(85289): 5.5e-06
Smith-Waterman score: 306; 34.0% identity (57.0% similar) in 235 aa overlap (7-236:3-214)
10 20 30 40 50 60
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
: ..:: . :. .: .:.:..:: :.. : : : . :
NP_001 MNLNFTSPLH-PASSQRPTSFFIEDIL------------LHKPKPLREVAPDHFAS
10 20 30 40
70 80 90 100 110
pF1KB7 CTGS--PSL-RAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALA
.: : : .:::. . ::. :.: . . . :. ... : ::
NP_001 SLASRVPLLDYGYPLMPT----PTL---LAPHAHHPLHKGDHHHPYFLTTSGMPV-PALF
50 60 70 80 90
120 130 140 150 160 170
pF1KB7 SSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQV
...: : . .. :..::.:.. :: ::::.:. :.:::::.:..:: .:.:.. ::
NP_001 PHPQHAELPGKHCRR-RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 KTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPT-SEEIEAEEKMNSQAQGQEQL-E
:::.:::::: ::. :. .:. : : : . .. : :: : : : : : :
NP_001 KTWFQNRRMKHKKQ-LRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTE
160 170 180 190 200 210
240 250 260 270
pF1KB7 PSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
:
NP_001 PEDEVDIGDEGELGSGPHVL
220 230
>>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H (488 aa)
initn: 237 init1: 237 opt: 298 Z-score: 224.4 bits: 50.2 E(85289): 9.3e-06
Smith-Waterman score: 322; 30.7% identity (58.0% similar) in 231 aa overlap (13-240:164-382)
10 20 30 40
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKL
:. : . : ::.::: : ..
NP_068 QQQQPPPPPRAGALQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEG
140 150 160 170 180 190
50 60 70 80 90
pF1KB7 SLYSVCPSLVV--RPKPLHSCTGSPSL-RAYPLLSVITRQPTVISHLVPATPGIAQALSC
. ::.. :: .: .:: . . :. :.. ...: : . .:
NP_068 NTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINEASAILSPLNSNPRNSVQ----
200 210 220 230 240
100 110 120 130 140 150
pF1KB7 HQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLS
:: .. :: :. .... .: ..: ::..:..:: ::::.:. :::..
NP_068 HQFQDTF----PGPYAVLTKDT---MPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVT
250 260 270 280 290 300
160 170 180 190 200 210
pF1KB7 TPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIE
::: .:: ::::. :::.:.:::::::.. .:. : :. ... :... :
NP_068 KPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGAPAADG-E
310 320 330 340 350 360
220 230 240 250 260 270
pF1KB7 AEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
.:. :...:. . : :...
NP_068 QDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSERSLHQTTVIKAPVTGALITASSA
370 380 390 400 410 420
>>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein (387 aa)
initn: 271 init1: 271 opt: 295 Z-score: 223.6 bits: 49.7 E(85289): 1e-05
Smith-Waterman score: 299; 48.5% identity (72.7% similar) in 99 aa overlap (97-195:205-294)
70 80 90 100 110 120
pF1KB7 LRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQP
..:: . : : . ..::. :.:
NP_064 SNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEE------GDREITSSR---ESP
180 190 200 210 220
130 140 150 160 170 180
pF1KB7 TPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRM
: ::::..:: :.. :: ::..:..:::::. ::.::: .:.::. ::::::::::
NP_064 PVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRT
230 240 250 260 270 280
190 200 210 220 230 240
pF1KB7 KWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEA
:::... :
NP_064 KWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTP
290 300 310 320 330 340
>>NP_064448 (OMIM: 605211) barH-like 1 homeobox protein (327 aa)
initn: 341 init1: 292 opt: 292 Z-score: 222.5 bits: 49.2 E(85289): 1.2e-05
Smith-Waterman score: 296; 35.3% identity (58.8% similar) in 187 aa overlap (12-195:80-240)
10 20 30
pF1KB7 MHCHAELRLSSPGQLKA---ARRRYKTFMIDEILSKETCDY
::::.: .: ..:.: .::. :
NP_064 SPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILAD--CK-
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 FEKLSLYSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALS
: . : .: .:.:. : . .. . . . . :.. :
NP_064 ----------PLAACAP---YSSSGQPAA-PEPGGRLAAKAAEDFRDKLDKSGSNASSDS
110 120 130 140 150
100 110 120 130 140 150
pF1KB7 CHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYL
..: : : . ..::. ..: : ::::..:: ::. :: ::..:..::::
NP_064 EYKVKEE------GDREISSSR---DSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYL
160 170 180 190 200
160 170 180 190 200 210
pF1KB7 STPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEI
:. ::..:: ::.::. :::::::::: :::... :
NP_064 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB7 EAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPL
NP_064 PQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRA
270 280 290 300 310 320
>>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5 (289 aa)
initn: 287 init1: 243 opt: 282 Z-score: 216.2 bits: 47.9 E(85289): 2.7e-05
Smith-Waterman score: 282; 32.4% identity (56.9% similar) in 204 aa overlap (84-279:86-282)
60 70 80 90 100 110
pF1KB7 RPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGG
:. . : . : : :: : . ..:.
NP_005 HGYCSPTSASYGKALNPYQYQYHGVNGSAGSYPAKAYADYSYASSYHQYGGAYN-RVPS-
60 70 80 90 100 110
120 130 140 150 160
pF1KB7 EALASSESETEQPTPRQ-----KKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQ
: . :.:. .: :. :: :. :::.. .:: .:...::: .::. :.: .::
NP_005 -ATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 SLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTK-PKGR-PKKNSIPTSEEI-EAEEKMN
:::::: ::: :.::.: : :: ..:.:. : . :.. : . : : . : . .
NP_005 SLGLTQTQVKIWFQNKRSKIKK-IMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSR
180 190 200 210 220 230
230 240 250 260 270
pF1KB7 SQAQGQEQLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
: .. . :...: : .: . . ..:: :.: ::.
NP_005 SLSHHPHAHPPTSNQSPASSYLENSA---SWYTSAASSINSHLPPPGSLQHPLALASGTL
240 250 260 270 280
NP_005 Y
>>NP_005211 (OMIM: 104510,190320,600525) homeobox protei (287 aa)
initn: 298 init1: 243 opt: 275 Z-score: 211.4 bits: 47.0 E(85289): 4.9e-05
Smith-Waterman score: 279; 35.3% identity (60.6% similar) in 170 aa overlap (120-277:116-281)
90 100 110 120 130 140
pF1KB7 TPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLE
:.:... . . :: :. :::.. :: .:.
NP_005 YTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQ
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB7 KKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTK--PKGRP
..::: .::. :.: .:: .::::: ::: :.:::: :.::. .: :.: . :..
NP_005 RRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNG--EVPLEHSPNNSD
150 160 170 180 190 200
210 220 230 240 250
pF1KB7 KK--NSIPTSEEIEAEEKMNSQAQGQEQLEP----SQGQEELCEAQEP--KARDV--PLE
. :: : : . . .. : .. :: : : . : . . .:... :
NP_005 SMACNS-PPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHL
210 220 230 240 250 260
260 270
pF1KB7 MAEPPDPPQELPIPSSEPPPLS
. .::.: : : :::
NP_005 QQQPPQPAT-LHHASPGPPPNPGAVY
270 280
279 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:18:26 2016 done: Sat Nov 5 16:18:28 2016
Total Scan time: 8.570 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]