FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7570, 279 aa
  1>>>pF1KB7570 279 - 279 aa - 279 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6796+/-0.000774; mu= 7.6332+/- 0.047
 mean_var=196.9166+/-40.566, 0's: 0 Z-trim(115.5): 167  B-trim: 817 in 1/54
 Lambda= 0.091397
 statistics sampled from 15873 (16056) to 15873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.493), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS8481.1 BARX2 gene_id:8538|Hs108|chr11          ( 279) 1868 257.7 6.7e-69
CCDS35070.2 BARX1 gene_id:56033|Hs108|chr9         ( 254)  556 84.7 7.5e-17


>>CCDS8481.1 BARX2 gene_id:8538|Hs108|chr11               (279 aa)
 initn: 1868 init1: 1868 opt: 1868  Z-score: 1350.4  bits: 257.7 E(32554): 6.7e-69
Smith-Waterman score: 1868; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KB7 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 CTGSPSLRAYPLLSVITRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 YQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQ
              190       200       210       220       230       240

              250       260       270         
pF1KB7 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       :::::::::::::::::::::::::::::::::::::::
CCDS84 EELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
              250       260       270         

>>CCDS35070.2 BARX1 gene_id:56033|Hs108|chr9              (254 aa)
 initn: 612 init1: 407 opt: 556  Z-score: 416.0  bits: 84.7 E(32554): 7.5e-17
Smith-Waterman score: 556; 45.6% identity (65.8% similar) in 237 aa overlap (21-242:25-253)

                   10        20        30                  40      
pF1KB7     MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKE----------TCDYFEKLSLYS
                               ::..:::.:::..           .     .:  ..
CCDS35 MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFG
               10        20        30        40        50        60

         50        60           70        80        90       100   
pF1KB7 VCPSLVVRPKPLHSCTGSPSLRA---YPLLSVITRQPTVISHLVPATPGIAQALSCHQVT
       :   :..::   :  . .    :   .::  .      . : :. : ::.  : .  .. 
CCDS35 VQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCS--GLSSALLAAGPGLPGAAGAPHLP
               70        80        90         100       110        

           110       120       130       140       150       160   
pF1KB7 EAVSAEAPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDR
         .. .   :.  :.. .:   :  . :: :::::.:::::::::::.:.::::::::::
CCDS35 LELQLR---GKLEAAGPGE---PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDR
      120          130          140       150       160       170  

           170       180       190        200       210       220  
pF1KB7 LDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQ-EAPTKPKGRPKKNSIPTSEEIEAEE
       .:::.::::.:::::::::::::::::.::.::  :.:::::::::::::::::..  .:
CCDS35 IDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQE
            180       190       200       210       220       230  

            230        240       250       260       270         
pF1KB7 KMNSQAQGQE-QLEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
       . ..  .  :   :::. ..:                                     
CCDS35 RAKDAEKPAEVPGEPSDRSRED                                    
            240       250                                        




279 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:18:25 2016 done: Sat Nov  5 16:18:26 2016
 Total Scan time:  2.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]