Result of FASTA (omim) for
pF1KB7552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7552, 268 aa
1>>>pF1KB7552 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5588+/-0.000349; mu= 7.1757+/- 0.022
mean_var=280.3659+/-61.545, 0's: 0 Z-trim(122.6): 1730 B-trim: 224 in 2/56
Lambda= 0.076597
statistics sampled from 38798 (41041) to 38798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.481), width: 16
Scan time: 7.620
The best scores are: opt bits E(85289)
NP_003059 (OMIM: 172800,602150,608890) zinc finger ( 268) 1876 219.9 4e-57
NP_005976 (OMIM: 604238) zinc finger protein SNAI1 ( 264) 903 112.3 9.2e-25
NP_840101 (OMIM: 612741) zinc finger protein SNAI3 ( 292) 837 105.1 1.5e-22
NP_112599 (OMIM: 605858) transcriptional repressor ( 348) 599 78.9 1.4e-14
NP_001166122 (OMIM: 601276) zinc finger protein 17 ( 481) 427 60.1 8.9e-09
XP_016880500 (OMIM: 194524) PREDICTED: zinc finger ( 548) 419 59.3 1.8e-08
XP_016880497 (OMIM: 194524) PREDICTED: zinc finger ( 548) 419 59.3 1.8e-08
XP_016880499 (OMIM: 194524) PREDICTED: zinc finger ( 548) 419 59.3 1.8e-08
XP_016880498 (OMIM: 194524) PREDICTED: zinc finger ( 548) 419 59.3 1.8e-08
NP_001290211 (OMIM: 194524) zinc finger protein 18 ( 548) 419 59.3 1.8e-08
XP_016880495 (OMIM: 194524) PREDICTED: zinc finger ( 549) 419 59.3 1.8e-08
NP_001290210 (OMIM: 194524) zinc finger protein 18 ( 549) 419 59.3 1.8e-08
XP_011522304 (OMIM: 194524) PREDICTED: zinc finger ( 549) 419 59.3 1.8e-08
NP_653281 (OMIM: 194524) zinc finger protein 18 is ( 549) 419 59.3 1.8e-08
XP_016880496 (OMIM: 194524) PREDICTED: zinc finger ( 549) 419 59.3 1.8e-08
XP_005259991 (OMIM: 194542) PREDICTED: zinc finger ( 503) 418 59.1 1.8e-08
XP_016882360 (OMIM: 194542) PREDICTED: zinc finger ( 503) 418 59.1 1.8e-08
XP_011526368 (OMIM: 194542) PREDICTED: zinc finger ( 571) 418 59.2 2e-08
XP_016882359 (OMIM: 194542) PREDICTED: zinc finger ( 583) 418 59.2 2e-08
NP_057348 (OMIM: 194542) zinc finger protein 44 is ( 615) 418 59.3 2e-08
XP_011526366 (OMIM: 194542) PREDICTED: zinc finger ( 616) 418 59.3 2e-08
XP_011526364 (OMIM: 194542) PREDICTED: zinc finger ( 653) 418 59.3 2.1e-08
NP_001157748 (OMIM: 194542) zinc finger protein 44 ( 663) 418 59.3 2.1e-08
NP_001171680 (OMIM: 616454,616468,616469) zinc fin ( 712) 416 59.1 2.6e-08
NP_079017 (OMIM: 616454,616468,616469) zinc finger ( 720) 416 59.1 2.6e-08
NP_003442 (OMIM: 601276) zinc finger protein 177 i ( 321) 406 57.5 3.5e-08
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434) 407 57.8 3.9e-08
XP_016882728 (OMIM: 194628) PREDICTED: zinc finger ( 390) 406 57.7 3.9e-08
NP_001295198 (OMIM: 194628) zinc finger protein 12 ( 390) 406 57.7 3.9e-08
NP_001008727 (OMIM: 194628) zinc finger protein 12 ( 390) 406 57.7 3.9e-08
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476) 407 57.9 4.1e-08
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519) 407 57.9 4.3e-08
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_016882859 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_011526665 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_011526668 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_011526667 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_005260155 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_011526671 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
XP_011526670 (OMIM: 611811) PREDICTED: zinc finger ( 556) 407 58.0 4.5e-08
NP_597715 (OMIM: 609451) zinc finger protein 90 ho ( 636) 408 58.2 4.5e-08
XP_005255861 (OMIM: 609451) PREDICTED: zinc finger ( 636) 408 58.2 4.5e-08
NP_001292132 (OMIM: 609451) zinc finger protein 90 ( 636) 408 58.2 4.5e-08
XP_016882857 (OMIM: 611811) PREDICTED: zinc finger ( 578) 407 58.0 4.6e-08
XP_016878441 (OMIM: 609451) PREDICTED: zinc finger ( 720) 408 58.2 4.8e-08
XP_011526664 (OMIM: 611811) PREDICTED: zinc finger ( 665) 407 58.1 5e-08
NP_115809 (OMIM: 611811) zinc finger protein 333 i ( 665) 407 58.1 5e-08
XP_016882856 (OMIM: 611811) PREDICTED: zinc finger ( 665) 407 58.1 5e-08
NP_001243583 (OMIM: 603972) zinc finger protein 43 ( 744) 405 57.9 6.2e-08
>>NP_003059 (OMIM: 172800,602150,608890) zinc finger pro (268 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1146.6 bits: 219.9 E(85289): 4e-57
Smith-Waterman score: 1876; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KB7 MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPITVWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPITVWT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 HTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKK
190 200 210 220 230 240
250 260
pF1KB7 YQCKNCSKTFSRMSLLHKHEESGCCVAH
::::::::::::::::::::::::::::
NP_003 YQCKNCSKTFSRMSLLHKHEESGCCVAH
250 260
>>NP_005976 (OMIM: 604238) zinc finger protein SNAI1 [Ho (264 aa)
initn: 921 init1: 745 opt: 903 Z-score: 565.5 bits: 112.3 E(85289): 9.2e-25
Smith-Waterman score: 903; 54.4% identity (71.5% similar) in 274 aa overlap (1-264:1-259)
10 20 30 40 50
pF1KB7 MPRSFLVKKHFNASKKPNYSEL-DTHT--VIISPYLYESYSMPVIPQPEILSSGAYSPIT
:::::::.: . ..::::::: :.. .. .:: ... . .:: ::::. : :.
NP_005 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPY-DQAHLLAAIPPPEILNPTASLPML
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPP-SDTSSKDHSGSESPISDEEERLQSK
.: .. .:: : . . : : ::. :: .: : :: : ..:
NP_005 IWDSVLAPQAQ-PIAWASLRLQESP--RVAELTSLSDEDSGKGSQPPSPPSPAPSSFSS-
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LSDPHAIEAEKFQCNLCNKTYSTFSGLAK-HKQLHC-----DAQSRKSFSCKYCDKEYVS
.. ..::: .:..: ::.. ::: : :.::.:.::::.:::.:
NP_005 -TSVSSLEAE---------AYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLS
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 LGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRA
:::::::::.::::::: ::::::::::::::.::::::::::::::.:::::::::::
NP_005 LGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRA
170 180 190 200 210 220
240 250 260
pF1KB7 HLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
:::::::::::::. :..:::::::::::.::::
NP_005 HLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
230 240 250 260
>>NP_840101 (OMIM: 612741) zinc finger protein SNAI3 [Ho (292 aa)
initn: 862 init1: 814 opt: 837 Z-score: 525.7 bits: 105.1 E(85289): 1.5e-22
Smith-Waterman score: 879; 51.4% identity (67.7% similar) in 294 aa overlap (1-265:1-289)
10 20 30 40
pF1KB7 MPRSFLVKKHFNASKKPNYSELDTHTVI----------ISPYL---YESYSMPV-IPQPE
:::::::: : .. . ::: .:.:. : . : : :. :.: .:::
NP_840 MPRSFLVKTH-SSHRVPNYRRLETQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQPW
10 20 30 40 50
50 60 70 80 90 100
pF1KB7 ILSSGAYSPITVWTTAAPFHAQLPNGLSPL--SGYSSSLGRVSPPPPSDTSSKDHSGSES
:: : . :.. .: .::. : : . .:.. : .: : .: .
NP_840 DRSS-AVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD--SLNHL-NLP
60 70 80 90 100 110
110 120 130 140 150
pF1KB7 PISDEEERLQSKLS-DPHA-----IEAEK-------FQCNLCNKTYSTFSGLAKHKQLHC
:. : . :. : :. . ::. :.: :.: : :..:::.:.::::
NP_840 PLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHC
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB7 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEK
: . :.::::::::.::::::::::::::::.:::::::::::::::::.:::::::
NP_840 HLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEK
180 190 200 210 220 230
220 230 240 250 260
pF1KB7 PFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
:..: ::.::::::::::::::::::.:::.:. :.::::::::: .:::::::
NP_840 PYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
240 250 260 270 280 290
>>NP_112599 (OMIM: 605858) transcriptional repressor scr (348 aa)
initn: 794 init1: 575 opt: 599 Z-score: 382.7 bits: 78.9 E(85289): 1.4e-14
Smith-Waterman score: 599; 58.0% identity (78.3% similar) in 138 aa overlap (127-264:190-327)
100 110 120 130 140 150
pF1KB7 KDHSGSESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSR
. :. :.:::.: :.:..::: : . .:.
NP_112 LGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQ
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB7 KSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCP
. : : : :::. :. ::. :: : : .::::::::::::::.:.:::::::.:
NP_112 LARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCA
220 230 240 250 260 270
220 230 240 250 260
pF1KB7 HCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
::..:::::::::::.:::: :..::: :.:.:. : :.:: ::.:
NP_112 HCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPA
280 290 300 310 320 330
NP_112 PPQLSPVQA
340
>>NP_001166122 (OMIM: 601276) zinc finger protein 177 is (481 aa)
initn: 793 init1: 289 opt: 427 Z-score: 278.6 bits: 60.1 E(85289): 8.9e-09
Smith-Waterman score: 427; 34.8% identity (63.7% similar) in 204 aa overlap (68-263:224-420)
40 50 60 70 80 90
pF1KB7 SMPVIPQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSK
:.:.: . . :. :..:: ...
NP_001 HLRTPTGQKFQEYEQCDMSFSLHSSCSVREQIPTGEK--GDECSDYGKISPLSVHTKTGS
200 210 220 230 240 250
100 110 120 130 140 150
pF1KB7 DHSGSESPISDEEERLQSKLSDPHAIEAEK----FQCNLCNKTYSTFSGLAKHKQLHCDA
. : : ...:. . . :: . ..... ..:. :.:.. :.: :: . :
NP_001 VEEGLEC--NEHEKTFTDPLSLQNCVRTHSGEMPYECSDCGKAFIFQSSLKKHMRSHT--
260 270 280 290 300
160 170 180 190 200 210
pF1KB7 QSRKSFSCKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEK
..: . : .: : . . . :..: :::: : :: :::::. : :: :.:::::::
NP_001 -GEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEK
310 320 330 340 350 360
220 230 240 250 260
pF1KB7 PFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLL--HKHEESGCCVAH
:. : :..:: :.:.:. : ..:. : :.:..:.:.:: : : ::. ..:
NP_001 PYECSDCGKAFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVHKRTHTGEKTYEC
370 380 390 400 410 420
NP_001 KECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEKAFSTSTNLIMHKRIHNGQKLHE
430 440 450 460 470 480
>>XP_016880500 (OMIM: 194524) PREDICTED: zinc finger pro (548 aa)
initn: 629 init1: 282 opt: 419 Z-score: 273.2 bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)
50 60 70 80 90 100
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
::: : ..::. : : :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
330 340 350 360 370
110 120 130 140 150 160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
: . ::.: :. ..:.: :.:. : :.::. : : :.. : .. :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
380 390 400 410 420 430
170 180 190 200 210
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
: : : .. . . : :::: :: : :::.:: :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
440 450 460 470 480 490
220 230 240 250 260
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
...: .:::. : ..:. : :.:..:.:.:: : : ::..:
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
500 510 520 530 540
>>XP_016880497 (OMIM: 194524) PREDICTED: zinc finger pro (548 aa)
initn: 629 init1: 282 opt: 419 Z-score: 273.2 bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)
50 60 70 80 90 100
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
::: : ..::. : : :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
330 340 350 360 370
110 120 130 140 150 160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
: . ::.: :. ..:.: :.:. : :.::. : : :.. : .. :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
380 390 400 410 420 430
170 180 190 200 210
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
: : : .. . . : :::: :: : :::.:: :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
440 450 460 470 480 490
220 230 240 250 260
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
...: .:::. : ..:. : :.:..:.:.:: : : ::..:
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
500 510 520 530 540
>>XP_016880499 (OMIM: 194524) PREDICTED: zinc finger pro (548 aa)
initn: 629 init1: 282 opt: 419 Z-score: 273.2 bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)
50 60 70 80 90 100
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
::: : ..::. : : :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
330 340 350 360 370
110 120 130 140 150 160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
: . ::.: :. ..:.: :.:. : :.::. : : :.. : .. :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
380 390 400 410 420 430
170 180 190 200 210
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
: : : .. . . : :::: :: : :::.:: :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
440 450 460 470 480 490
220 230 240 250 260
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
...: .:::. : ..:. : :.:..:.:.:: : : ::..:
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
500 510 520 530 540
>>XP_016880498 (OMIM: 194524) PREDICTED: zinc finger pro (548 aa)
initn: 629 init1: 282 opt: 419 Z-score: 273.2 bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)
50 60 70 80 90 100
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
::: : ..::. : : :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
330 340 350 360 370
110 120 130 140 150 160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
: . ::.: :. ..:.: :.:. : :.::. : : :.. : .. :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
380 390 400 410 420 430
170 180 190 200 210
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
: : : .. . . : :::: :: : :::.:: :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
440 450 460 470 480 490
220 230 240 250 260
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
...: .:::. : ..:. : :.:..:.:.:: : : ::..:
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
500 510 520 530 540
>>NP_001290211 (OMIM: 194524) zinc finger protein 18 iso (548 aa)
initn: 629 init1: 282 opt: 419 Z-score: 273.2 bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)
50 60 70 80 90 100
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
::: : ..::. : : :::
NP_001 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
330 340 350 360 370
110 120 130 140 150 160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
: . ::.: :. ..:.: :.:. : :.::. : : :.. : .. :.
NP_001 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
380 390 400 410 420 430
170 180 190 200 210
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
: : : .. . . : :::: :: : :::.:: :. : . ::::::..:: :
NP_001 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
440 450 460 470 480 490
220 230 240 250 260
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
...: .:::. : ..:. : :.:..:.:.:: : : ::..:
NP_001 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
500 510 520 530 540
268 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:39:33 2016 done: Fri Nov 4 08:39:34 2016
Total Scan time: 7.620 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]