FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7535, 172 aa
  1>>>pF1KB7535 172 - 172 aa - 172 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9809+/-0.000353; mu= 14.0088+/- 0.022
 mean_var=57.6926+/-11.622, 0's: 0 Z-trim(113.1): 7  B-trim: 0 in 0/50
 Lambda= 0.168855
 statistics sampled from 22234 (22239) to 22234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.261), width:  16
 Scan time:  4.640

The best scores are:                                      opt bits E(85289)
NP_002687 (OMIM: 602013) DNA-directed RNA polymera ( 172) 1149 287.9 5.6e-78


>>NP_002687 (OMIM: 602013) DNA-directed RNA polymerase I  (172 aa)
 initn: 1149 init1: 1149 opt: 1149  Z-score: 1521.0  bits: 287.9 E(85289): 5.6e-78
Smith-Waterman score: 1149; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KB7 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
               70        80        90       100       110       120

              130       140       150       160       170  
pF1KB7 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
              130       140       150       160       170  




172 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:29:57 2016 done: Fri Nov  4 08:29:58 2016
 Total Scan time:  4.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]