Result of FASTA (omim) for
pF1KB7532
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7532, 256 aa
1>>>pF1KB7532 256 - 256 aa - 256 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2289+/-0.000332; mu= -1.4558+/- 0.021
mean_var=268.6598+/-55.562, 0's: 0 Z-trim(123.5): 6 B-trim: 428 in 1/59
Lambda= 0.078248
statistics sampled from 43334 (43340) to 43334 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.508), width: 16
Scan time: 7.700
The best scores are: opt bits E(85289)
NP_006226 (OMIM: 601206) POU domain class 2-associ ( 256) 1755 210.3 2.7e-54
XP_006718922 (OMIM: 601206) PREDICTED: POU domain ( 276) 1711 205.4 9e-53
XP_005271650 (OMIM: 601206) PREDICTED: POU domain ( 303) 1707 205.0 1.3e-52
XP_005271651 (OMIM: 601206) PREDICTED: POU domain ( 303) 1707 205.0 1.3e-52
XP_016873421 (OMIM: 601206) PREDICTED: POU domain ( 157) 1047 130.2 2.2e-30
XP_006718923 (OMIM: 601206) PREDICTED: POU domain ( 204) 999 124.9 1.1e-28
>>NP_006226 (OMIM: 601206) POU domain class 2-associatin (256 aa)
initn: 1755 init1: 1755 opt: 1755 Z-score: 1095.7 bits: 210.3 E(85289): 2.7e-54
Smith-Waterman score: 1755; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)
10 20 30 40 50 60
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE
190 200 210 220 230 240
250
pF1KB7 DSDAYALNHTLSVEGF
::::::::::::::::
NP_006 DSDAYALNHTLSVEGF
250
>>XP_006718922 (OMIM: 601206) PREDICTED: POU domain clas (276 aa)
initn: 1705 init1: 1705 opt: 1711 Z-score: 1068.4 bits: 205.4 E(85289): 9e-53
Smith-Waterman score: 1711; 98.0% identity (99.2% similar) in 256 aa overlap (2-256:21-276)
10 20 30 40
pF1KB7 MLWQKP-TAPEQAPAPARPYQGVRVKEPVKELLRRKRGHAS
.:.. ::::::::::::::::::::::::::::::::::
XP_006 MEQRQPILSGTMAADPVVSAVWMRAATAPEQAPAPARPYQGVRVKEPVKELLRRKRGHAS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 PWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 VGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDM
190 200 210 220 230 240
230 240 250
pF1KB7 EDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
::::::::::::::::::::::::::::::::::::
XP_006 EDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
250 260 270
>>XP_005271650 (OMIM: 601206) PREDICTED: POU domain clas (303 aa)
initn: 1707 init1: 1707 opt: 1707 Z-score: 1065.4 bits: 205.0 E(85289): 1.3e-52
Smith-Waterman score: 1707; 99.2% identity (99.6% similar) in 252 aa overlap (5-256:52-303)
10 20 30
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRR
. ::::::::::::::::::::::::::::
XP_005 LQNSLAAGCGHVPGSQETRGSCGSPATSIGRATAPEQAPAPARPYQGVRVKEPVKELLRR
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTR
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB7 SSATPAVGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSATPAVGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPE
210 220 230 240 250 260
220 230 240 250
pF1KB7 PVLQDMEDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
::::::::::::::::::::::::::::::::::::::::::
XP_005 PVLQDMEDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
270 280 290 300
>>XP_005271651 (OMIM: 601206) PREDICTED: POU domain clas (303 aa)
initn: 1707 init1: 1707 opt: 1707 Z-score: 1065.4 bits: 205.0 E(85289): 1.3e-52
Smith-Waterman score: 1707; 99.2% identity (99.6% similar) in 252 aa overlap (5-256:52-303)
10 20 30
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRR
. ::::::::::::::::::::::::::::
XP_005 LQNSLAAGCGHVPGSQETRGSCGSPATSIGRATAPEQAPAPARPYQGVRVKEPVKELLRR
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTR
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB7 SSATPAVGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSATPAVGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPE
210 220 230 240 250 260
220 230 240 250
pF1KB7 PVLQDMEDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
::::::::::::::::::::::::::::::::::::::::::
XP_005 PVLQDMEDPRRAASSLTIDKLLLEEEDSDAYALNHTLSVEGF
270 280 290 300
>>XP_016873421 (OMIM: 601206) PREDICTED: POU domain clas (157 aa)
initn: 1047 init1: 1047 opt: 1047 Z-score: 666.5 bits: 130.2 E(85289): 2.2e-30
Smith-Waterman score: 1047; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRRKRGHASSGAAPAPTAVVLPHQPLATY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPATLQPLAPWTPYTEYVPHEAVSCPYSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTRSSATPAVGPPLEGPEHQAPLTYFPWP
::::::::::::::::::::::::::::::::
XP_016 DMYVQPVCPSYTVVGPSSVLTYASPPLITNVTGPVSS
130 140 150
190 200 210 220 230 240
pF1KB7 QPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLQDMEDPRRAASSLTIDKLLLEEE
>>XP_006718923 (OMIM: 601206) PREDICTED: POU domain clas (204 aa)
initn: 999 init1: 999 opt: 999 Z-score: 635.7 bits: 124.9 E(85289): 1.1e-28
Smith-Waterman score: 999; 98.6% identity (99.3% similar) in 148 aa overlap (5-152:52-199)
10 20 30
pF1KB7 MLWQKPTAPEQAPAPARPYQGVRVKEPVKELLRR
. ::::::::::::::::::::::::::::
XP_006 LQNSLAAGCGHVPGSQETRGSCGSPATSIGRATAPEQAPAPARPYQGVRVKEPVKELLRR
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KRGHASSGAAPAPTAVVLPHQPLATYTTVGPSCLDMEGSVSAVTEEAALCAGWLSQPTPA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLQPLAPWTPYTEYVPHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTGP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB7 SSATPAVGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPE
XP_006 VSS
256 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:29:28 2016 done: Fri Nov 4 08:29:30 2016
Total Scan time: 7.700 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]