Result of FASTA (omim) for
pF1KB7508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7508, 242 aa
1>>>pF1KB7508 242 - 242 aa - 242 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5765+/-0.000285; mu= 10.9906+/- 0.018
mean_var=125.9864+/-25.309, 0's: 0 Z-trim(122.7): 46 B-trim: 2707 in 2/55
Lambda= 0.114265
statistics sampled from 41161 (41218) to 41161 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.483), width: 16
Scan time: 8.060
The best scores are: opt bits E(85289)
NP_002460 (OMIM: 159991,614408) myogenic factor 6 ( 242) 1633 279.2 4.6e-75
NP_002470 (OMIM: 159980) myogenin [Homo sapiens] ( 224) 527 96.8 3.3e-20
NP_005584 (OMIM: 159990) myogenic factor 5 [Homo s ( 255) 499 92.2 9e-19
NP_002469 (OMIM: 159970) myoblast determination pr ( 320) 420 79.3 8.9e-15
>>NP_002460 (OMIM: 159991,614408) myogenic factor 6 [Hom (242 aa)
initn: 1633 init1: 1633 opt: 1633 Z-score: 1468.6 bits: 279.2 E(85289): 4.6e-75
Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KB7 MMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 VANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RTCSSQWPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSISSEERKLPCVEEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RTCSSQWPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSISSEERKLPCVEEVV
190 200 210 220 230 240
pF1KB7 EK
::
NP_002 EK
>>NP_002470 (OMIM: 159980) myogenin [Homo sapiens] (224 aa)
initn: 542 init1: 463 opt: 527 Z-score: 483.7 bits: 96.8 E(85289): 3.3e-20
Smith-Waterman score: 570; 45.6% identity (64.0% similar) in 250 aa overlap (3-240:1-222)
10 20 30 40 50
pF1KB7 MMMDLFETGSYFF----YLDGEN---VTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAG
:.:.::. ::. . :::: : :: .: : : .. ::::
NP_002 MELYETSPYFYQEPRFYDGENYLPVHLQGFE----PPGYERTELTLSP----------
10 20 30 40
60 70 80 90 100 110
pF1KB7 SDSSGEEHVLAPPGL-QPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
.. : : :: : ::::::: ::::.:::::. .:::.::::::.:::::.:::
NP_002 -EAPGP---LEDKGLGTPEHCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQEL--GVDPFSYRPK
:::::: :. ::::::::::::::::.:::::: :: :.:.:. . : : :.
NP_002 FEALKRSTLLNPNQRLPKVEILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVPS
110 120 130 140 150 160
180 190 200 210 220
pF1KB7 QENLEGADFLRTCSSQWPSVSDHSRGLVITAKEGGA--SIDSSASSSLRCLSSIVDSISS
. . ..: .:: .: : .: ..:. : . : . . .:. :.::::::.
NP_002 ECSSHSA----SCSPEWGS------ALEFSANPGDHLLTADPTDAHNLHSLTSIVDSITV
170 180 190 200 210
230 240
pF1KB7 EERKLPCVEEVVEK
:. .. .:..
NP_002 EDVSVAFPDETMPN
220
>>NP_005584 (OMIM: 159990) myogenic factor 5 [Homo sapie (255 aa)
initn: 484 init1: 396 opt: 499 Z-score: 458.0 bits: 92.2 E(85289): 9e-19
Smith-Waterman score: 499; 50.5% identity (69.6% similar) in 184 aa overlap (53-234:48-223)
30 40 50 60 70 80
pF1KB7 QPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWAC
::: .::: :: : : :.::.:::
NP_005 GSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDE--DEHVRAPTG---HHQAGHCLMWAC
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB7 KTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQRLPKVEILRSAISYIE
:.:::::. :::::::.::::::::.:.:::.::: :..:::::::::::::.:: :::
NP_005 KACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAIRYIE
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB7 RLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQ-WPSVSDHSRGLVITA
::.::. .: :.. : . : .: . . . .: . :.: : :. ..
NP_005 SLQELLR--EQVENYYSLPGQSCS-EPTSPTSNCSDGMPECNSPVWSRKSSTFDSIYCPD
140 150 160 170 180
210 220 230 240
pF1KB7 KEGGASIDSSASSSLRCLSSIVDSI-SSEERKLPCVEEVVEK
. . :... ::: :::.::: : :::. ::
NP_005 VSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLASLSPVASTDSQPATPGASSSR
190 200 210 220 230 240
NP_005 LIYHVL
250
>>NP_002469 (OMIM: 159970) myoblast determination protei (320 aa)
initn: 472 init1: 388 opt: 420 Z-score: 386.3 bits: 79.3 E(85289): 8.9e-15
Smith-Waterman score: 446; 44.9% identity (58.4% similar) in 214 aa overlap (41-234:57-267)
20 30 40 50 60
pF1KB7 YFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSG---EEHVLAPPG
:.: . . : : . : .::: :: :
NP_002 DDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHPAPGAREDEHVRAPSG
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB7 LQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQR
: :.::.::::.::::.. .:::::::.::::::.:.:::::.::: : .:::::
NP_002 ---HHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNPNQR
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB7 LPKVEILRSAISYIERLQDLLHRLDQQEKMQELGV-DPFSYRPKQ--ENLEG---ADFLR
::::::::.:: ::: :: ::. : . : : . :. : :. :
NP_002 LPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASSPR
150 160 170 180 190 200
190 200 210 220 230
pF1KB7 T-CSSQWPSVSDHSRGLVITAKEGGASID----------SSASSSLRCLSSIVDSISSEE
. ::. . : : :: . :.: ::: ::::::. ::.:
NP_002 SNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERISTES
210 220 230 240 250 260
240
pF1KB7 RKLPCVEEVVEK
:
NP_002 PAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQSPDAAPQCPAGANPNPIYQVL
270 280 290 300 310 320
242 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:00:40 2016 done: Sat Nov 5 21:00:41 2016
Total Scan time: 8.060 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]