Result of FASTA (ccds) for
pF1KB7508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7508, 242 aa
1>>>pF1KB7508 242 - 242 aa - 242 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3837+/-0.000656; mu= 12.1177+/- 0.040
mean_var=119.4412+/-23.687, 0's: 0 Z-trim(115.1): 38 B-trim: 8 in 1/51
Lambda= 0.117354
statistics sampled from 15608 (15646) to 15608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.481), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS9019.1 MYF6 gene_id:4618|Hs108|chr12 ( 242) 1633 286.2 1.3e-77
CCDS1433.1 MYOG gene_id:4656|Hs108|chr1 ( 224) 527 98.9 2.9e-21
CCDS9020.1 MYF5 gene_id:4617|Hs108|chr12 ( 255) 499 94.2 8.6e-20
CCDS7826.1 MYOD1 gene_id:4654|Hs108|chr11 ( 320) 420 81.0 1.1e-15
>>CCDS9019.1 MYF6 gene_id:4618|Hs108|chr12 (242 aa)
initn: 1633 init1: 1633 opt: 1633 Z-score: 1506.8 bits: 286.2 E(32554): 1.3e-77
Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)
10 20 30 40 50 60
pF1KB7 MMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 HVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 VANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 VANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RTCSSQWPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSISSEERKLPCVEEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 RTCSSQWPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSISSEERKLPCVEEVV
190 200 210 220 230 240
pF1KB7 EK
::
CCDS90 EK
>>CCDS1433.1 MYOG gene_id:4656|Hs108|chr1 (224 aa)
initn: 542 init1: 463 opt: 527 Z-score: 495.2 bits: 98.9 E(32554): 2.9e-21
Smith-Waterman score: 570; 45.6% identity (64.0% similar) in 250 aa overlap (3-240:1-222)
10 20 30 40 50
pF1KB7 MMMDLFETGSYFF----YLDGEN---VTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAG
:.:.::. ::. . :::: : :: .: : : .. ::::
CCDS14 MELYETSPYFYQEPRFYDGENYLPVHLQGFE----PPGYERTELTLSP----------
10 20 30 40
60 70 80 90 100 110
pF1KB7 SDSSGEEHVLAPPGL-QPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA
.. : : :: : ::::::: ::::.:::::. .:::.::::::.:::::.:::
CCDS14 -EAPGP---LEDKGLGTPEHCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQEL--GVDPFSYRPK
:::::: :. ::::::::::::::::.:::::: :: :.:.:. . : : :.
CCDS14 FEALKRSTLLNPNQRLPKVEILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVPS
110 120 130 140 150 160
180 190 200 210 220
pF1KB7 QENLEGADFLRTCSSQWPSVSDHSRGLVITAKEGGA--SIDSSASSSLRCLSSIVDSISS
. . ..: .:: .: : .: ..:. : . : . . .:. :.::::::.
CCDS14 ECSSHSA----SCSPEWGS------ALEFSANPGDHLLTADPTDAHNLHSLTSIVDSITV
170 180 190 200 210
230 240
pF1KB7 EERKLPCVEEVVEK
:. .. .:..
CCDS14 EDVSVAFPDETMPN
220
>>CCDS9020.1 MYF5 gene_id:4617|Hs108|chr12 (255 aa)
initn: 484 init1: 396 opt: 499 Z-score: 468.8 bits: 94.2 E(32554): 8.6e-20
Smith-Waterman score: 499; 50.5% identity (69.6% similar) in 184 aa overlap (53-234:48-223)
30 40 50 60 70 80
pF1KB7 QPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSGEEHVLAPPGLQPPHCPGQCLIWAC
::: .::: :: : : :.::.:::
CCDS90 GSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDE--DEHVRAPTG---HHQAGHCLMWAC
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB7 KTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQRLPKVEILRSAISYIE
:.:::::. :::::::.::::::::.:.:::.::: :..:::::::::::::.:: :::
CCDS90 KACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAIRYIE
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB7 RLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGADFLRTCSSQ-WPSVSDHSRGLVITA
::.::. .: :.. : . : .: . . . .: . :.: : :. ..
CCDS90 SLQELLR--EQVENYYSLPGQSCS-EPTSPTSNCSDGMPECNSPVWSRKSSTFDSIYCPD
140 150 160 170 180
210 220 230 240
pF1KB7 KEGGASIDSSASSSLRCLSSIVDSI-SSEERKLPCVEEVVEK
. . :... ::: :::.::: : :::. ::
CCDS90 VSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLASLSPVASTDSQPATPGASSSR
190 200 210 220 230 240
CCDS90 LIYHVL
250
>>CCDS7826.1 MYOD1 gene_id:4654|Hs108|chr11 (320 aa)
initn: 472 init1: 388 opt: 420 Z-score: 395.2 bits: 81.0 E(32554): 1.1e-15
Smith-Waterman score: 446; 44.9% identity (58.4% similar) in 214 aa overlap (41-234:57-267)
20 30 40 50 60
pF1KB7 YFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPPEAGSDSSG---EEHVLAPPG
:.: . . : : . : .::: :: :
CCDS78 DDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHPAPGAREDEHVRAPSG
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB7 LQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQR
: :.::.::::.::::.. .:::::::.::::::.:.:::::.::: : .:::::
CCDS78 ---HHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNPNQR
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB7 LPKVEILRSAISYIERLQDLLHRLDQQEKMQELGV-DPFSYRPKQ--ENLEG---ADFLR
::::::::.:: ::: :: ::. : . : : . :. : :. :
CCDS78 LPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASSPR
150 160 170 180 190 200
190 200 210 220 230
pF1KB7 T-CSSQWPSVSDHSRGLVITAKEGGASID----------SSASSSLRCLSSIVDSISSEE
. ::. . : : :: . :.: ::: ::::::. ::.:
CCDS78 SNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERISTES
210 220 230 240 250 260
240
pF1KB7 RKLPCVEEVVEK
:
CCDS78 PAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQSPDAAPQCPAGANPNPIYQVL
270 280 290 300 310 320
242 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:00:40 2016 done: Sat Nov 5 21:00:40 2016
Total Scan time: 2.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]