FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7452, 271 aa
  1>>>pF1KB7452 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1286+/-0.00063; mu= 15.6551+/- 0.038
 mean_var=58.0837+/-11.574, 0's: 0 Z-trim(110.9): 6  B-trim: 0 in 0/50
 Lambda= 0.168286
 statistics sampled from 11950 (11955) to 11950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS42454.1 TPGS1 gene_id:91978|Hs108|chr19        ( 290) 1629 403.2 1.1e-112


>>CCDS42454.1 TPGS1 gene_id:91978|Hs108|chr19             (290 aa)
 initn: 1629 init1: 1629 opt: 1629  Z-score: 2136.6  bits: 403.2 E(32554): 1.1e-112
Smith-Waterman score: 1714; 93.4% identity (93.4% similar) in 290 aa overlap (1-271:1-290)

               10        20        30        40        50        60
pF1KB7 MAAVEKRRQAVPPPAGFTDSGRQSVSRAAGAAESEEDFLRQVGVTEMLRAALLKVLEARP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAVEKRRQAVPPPAGFTDSGRQSVSRAAGAAESEEDFLRQVGVTEMLRAALLKVLEARP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEPIAFLAHYFENMGLRSPVNGGAGEPPGQLLLQQQRLGRALWHLRLAHHSQRAAFNNNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEPIAFLAHYFENMGLRSPVNGGAGEPPGQLLLQQQRLGRALWHLRLAHHSQRAAFNNNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SVAYECLSAGGRRKRPGLDGRTYSELLRRICRDGQAPEEVVAPLLRKVQCRDHEAVPLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SVAYECLSAGGRRKRPGLDGRTYSELLRRICRDGQAPEEVVAPLLRKVQCRDHEAVPLSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FRAGTLTCFVLLEFVARAGALFQLLEDSAAAVADRRVGQAVLDTLEGALQASDAAAPARF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FRAGTLTCFVLLEFVARAGALFQLLEDSAAAVADRRVGQAVLDTLEGALQASDAAAPARF
              190       200       210       220       230       240

                                 250       260       270 
pF1KB7 LEAGSRL-------------------APMTREEFLERAAALFIAKVKPVG
       :::::::                   ::::::::::::::::::::::::
CCDS42 LEAGSRLGPDSLALALDRAVGGRRPSAPMTREEFLERAAALFIAKVKPVG
              250       260       270       280       290




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:58:06 2016 done: Fri Nov  4 07:58:06 2016
 Total Scan time:  2.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]