Result of FASTA (ccds) for
pF1KB7434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7434, 188 aa
1>>>pF1KB7434 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1511+/-0.000733; mu= 11.0767+/- 0.044
mean_var=134.4595+/-28.576, 0's: 0 Z-trim(113.3): 24 B-trim: 94 in 1/53
Lambda= 0.110606
statistics sampled from 13972 (13993) to 13972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.43), width: 16
Scan time: 2.120
The best scores are: opt bits E(32554)
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 1288 215.8 1.3e-56
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 1288 215.8 1.3e-56
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1048 177.5 4.3e-45
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 1036 175.6 1.6e-44
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1024 173.7 6.1e-44
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1024 173.7 6.1e-44
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 1010 171.4 2.9e-43
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 1004 170.5 5.6e-43
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 896 153.3 9.8e-38
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 811 139.7 1.2e-33
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 811 139.7 1.2e-33
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 747 129.4 1.1e-30
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 747 129.4 1.1e-30
>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1130.0 bits: 215.8 E(32554): 1.3e-56
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1130.0 bits: 215.8 E(32554): 1.3e-56
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 923.0 bits: 177.5 E(32554): 4.3e-45
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 912.7 bits: 175.6 E(32554): 1.6e-44
Smith-Waterman score: 1036; 80.9% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::.::::: ::: ::..::::::::::::.:::::: :::::::::: .::.:::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::. :: :::.::..::.:::: :: :. :::.::::::: :: :::::::::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: ::::::::::::::::::::.:.: :::: ::::::.::::::::::::::.::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa)
initn: 1024 init1: 1024 opt: 1024 Z-score: 902.3 bits: 173.7 E(32554): 6.1e-44
Smith-Waterman score: 1024; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::::::::::.::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa)
initn: 1024 init1: 1024 opt: 1024 Z-score: 902.3 bits: 173.7 E(32554): 6.1e-44
Smith-Waterman score: 1024; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::::::::::.::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS48 SDPEEDDE
>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa)
initn: 1010 init1: 1010 opt: 1010 Z-score: 890.3 bits: 171.4 E(32554): 2.9e-43
Smith-Waterman score: 1010; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::.::.::::::. ::: ::::::: :::::::.::: :::: ::::: ::..:::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::: .:.:.::.:::: ::.:.: :::.:::::: :.::.::::::::::.:
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : : :::::::::::: :::. . ::::: :::::::::::::::::::::.::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa)
initn: 1004 init1: 1004 opt: 1004 Z-score: 885.1 bits: 170.5 E(32554): 5.6e-43
Smith-Waterman score: 1004; 78.2% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::.:::: .:: ::..:::::::::::.:::::::.::::.::::: .::.:::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
CCDS14 SDPQEDDE
>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX (229 aa)
initn: 896 init1: 896 opt: 896 Z-score: 790.9 bits: 153.3 E(32554): 9.8e-38
Smith-Waterman score: 896; 78.9% identity (91.0% similar) in 166 aa overlap (23-188:64-229)
10 20 30 40 50
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMK
.::::::::::.:::::::.::::.:::::
CCDS14 IHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMK
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB7 LNYEVMTKLGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIM
.::.:::::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: :::::
CCDS14 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB7 PKKPAEEENGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERK
:.::::: : : :::::::::.:::: : :. .: ::.::::::::::::::::.::::
CCDS14 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
160 170 180 190 200 210
180
pF1KB7 QLVVYEEISDPEEDDE
:::.:::::::.::::
CCDS14 QLVIYEEISDPQEDDE
220
>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX (223 aa)
initn: 847 init1: 809 opt: 811 Z-score: 717.7 bits: 139.7 E(32554): 1.2e-33
Smith-Waterman score: 811; 72.5% identity (86.2% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: .:::::::::::::.:::::.:.: :::.. :: ..... .:
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB7 SDPEEDDE
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:46:01 2016 done: Fri Nov 4 07:46:01 2016
Total Scan time: 2.120 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]