FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7412, 339 aa
  1>>>pF1KB7412 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8604+/-0.00079; mu= 7.4280+/- 0.048
 mean_var=222.4356+/-45.588, 0's: 0 Z-trim(115.9): 146  B-trim: 0 in 0/54
 Lambda= 0.085995
 statistics sampled from 16362 (16530) to 16362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.508), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS31781.1 DBX2 gene_id:440097|Hs108|chr12        ( 339) 2319 299.7 2.2e-81


>>CCDS31781.1 DBX2 gene_id:440097|Hs108|chr12             (339 aa)
 initn: 2319 init1: 2319 opt: 2319  Z-score: 1574.5  bits: 299.7 E(32554): 2.2e-81
Smith-Waterman score: 2319; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB7 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 WRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSPEPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSPEPSE
              250       260       270       280       290       300

              310       320       330         
pF1KB7 RLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV
       :::::::::::::::::::::::::::::::::::::::
CCDS31 RLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV
              310       320       330         




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:33:34 2016 done: Fri Nov  4 07:33:35 2016
 Total Scan time:  2.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]