Result of FASTA (omim) for
pF1KB7383
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7383, 350 aa
1>>>pF1KB7383 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7269+/-0.000332; mu= 1.4818+/- 0.021
mean_var=201.2564+/-40.606, 0's: 0 Z-trim(121.9): 18 B-trim: 38 in 1/56
Lambda= 0.090406
statistics sampled from 39266 (39290) to 39266 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.461), width: 16
Scan time: 9.120
The best scores are: opt bits E(85289)
NP_008916 (OMIM: 606406) nuclear pore complex-inte ( 350) 2426 328.4 1.4e-89
XP_011521051 (OMIM: 606406) PREDICTED: nuclear por ( 350) 2426 328.4 1.4e-89
XP_011521050 (OMIM: 606406) PREDICTED: nuclear por ( 377) 2259 306.7 5.5e-83
XP_016879380 (OMIM: 606406) PREDICTED: nuclear por ( 232) 1460 202.3 8.8e-52
XP_011521053 (OMIM: 606406) PREDICTED: nuclear por ( 259) 1293 180.5 3.5e-45
XP_011521052 (OMIM: 606406) PREDICTED: nuclear por ( 341) 1206 169.3 1.1e-41
>>NP_008916 (OMIM: 606406) nuclear pore complex-interact (350 aa)
initn: 2426 init1: 2426 opt: 2426 Z-score: 1729.0 bits: 328.4 E(85289): 1.4e-89
Smith-Waterman score: 2426; 99.4% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 SYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAVEHRHSSGLPYWPYLTAETLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAVEHRHSSGLPYWPYLTAETLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALPSADDNLKTPAECLLYPLPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALPSADDNLKTPAECLLYPLPPS
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 ADDNLKTPPECLLTPLPPSAPPSADDNLKTPPECVCSLPFHPQRMIISRN
:::::::::::::::::::::::.::::::::::::::::::::::::::
NP_008 ADDNLKTPPECLLTPLPPSAPPSVDDNLKTPPECVCSLPFHPQRMIISRN
310 320 330 340 350
>>XP_011521051 (OMIM: 606406) PREDICTED: nuclear pore co (350 aa)
initn: 2426 init1: 2426 opt: 2426 Z-score: 1729.0 bits: 328.4 E(85289): 1.4e-89
Smith-Waterman score: 2426; 99.4% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAVEHRHSSGLPYWPYLTAETLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAVEHRHSSGLPYWPYLTAETLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALPSADDNLKTPAECLLYPLPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALPSADDNLKTPAECLLYPLPPS
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 ADDNLKTPPECLLTPLPPSAPPSADDNLKTPPECVCSLPFHPQRMIISRN
:::::::::::::::::::::::.::::::::::::::::::::::::::
XP_011 ADDNLKTPPECLLTPLPPSAPPSVDDNLKTPPECVCSLPFHPQRMIISRN
310 320 330 340 350
>>XP_011521050 (OMIM: 606406) PREDICTED: nuclear pore co (377 aa)
initn: 2259 init1: 2259 opt: 2259 Z-score: 1610.9 bits: 306.7 E(85289): 5.5e-83
Smith-Waterman score: 2259; 96.8% identity (98.2% similar) in 342 aa overlap (9-350:36-377)
10 20 30
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGG
:: : . .:. :::::::::::::::::
XP_011 LLFWLLFWLLLGFISHQSTCVSRWVLWLLFWLLLGFISHQSTCVINTLADHRHRGTDFGG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SPWLLIITVFLRSYKFAISLCTTYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
XP_011 SPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 EKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 LPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSADDNLKTPPECVCSL
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_011 LPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSVDDNLKTPPECVCSL
310 320 330 340 350 360
340 350
pF1KB7 PFHPQRMIISRN
::::::::::::
XP_011 PFHPQRMIISRN
370
>>XP_016879380 (OMIM: 606406) PREDICTED: nuclear pore co (232 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 1050.6 bits: 202.3 E(85289): 8.8e-52
Smith-Waterman score: 1460; 99.5% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAVEHRHSSGLPYWPYLTAETLK
::::::::::::::::::::::::::::::::::
XP_016 YMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRCTYNLVLPGSEKKYYSHA
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 NRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALPSADDNLKTPAECLLYPLPPS
>>XP_011521053 (OMIM: 606406) PREDICTED: nuclear pore co (259 aa)
initn: 1293 init1: 1293 opt: 1293 Z-score: 932.2 bits: 180.5 E(85289): 3.5e-45
Smith-Waterman score: 1293; 95.1% identity (97.1% similar) in 206 aa overlap (9-214:36-241)
10 20 30
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGG
:: : . .:. :::::::::::::::::
XP_011 LLFWLLFWLLLGFISHQSTCVSRWVLWLLFWLLLGFISHQSTCVINTLADHRHRGTDFGG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SPWLLIITVFLRSYKFAISLCTTYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
XP_011 SPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 EKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRCTYN
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSA
XP_011 LVLPGSEKKYYSHA
250
>>XP_011521052 (OMIM: 606406) PREDICTED: nuclear pore co (341 aa)
initn: 2005 init1: 1190 opt: 1206 Z-score: 869.2 bits: 169.3 E(85289): 1.1e-41
Smith-Waterman score: 1937; 86.0% identity (87.7% similar) in 342 aa overlap (9-350:36-341)
10 20 30
pF1KB7 MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGG
:: : . .:. :::::::::::::::::
XP_011 LLFWLLFWLLLGFISHQSTCVSRWVLWLLFWLLLGFISHQSTCVINTLADHRHRGTDFGG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SPWLLIITVFLRSYKFAISLCTTYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
XP_011 SPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHG
:::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 IKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEQ------------
130 140 150 160 170
160 170 180 190 200 210
pF1KB7 EKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
::::::::::::::::::::::::::::::::::::
XP_011 ------------------------EMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
180 190 200
220 230 240 250 260 270
pF1KB7 AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSA
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB7 LPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSADDNLKTPPECVCSL
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_011 LPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSVDDNLKTPPECVCSL
270 280 290 300 310 320
340 350
pF1KB7 PFHPQRMIISRN
::::::::::::
XP_011 PFHPQRMIISRN
330 340
350 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:47:15 2016 done: Sat Nov 5 09:47:16 2016
Total Scan time: 9.120 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]