Result of FASTA (ccds) for
pF1KB7307
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7307, 1706 aa
1>>>pF1KB7307 1706 - 1706 aa - 1706 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7567+/-0.00122; mu= 13.3175+/- 0.073
mean_var=153.0582+/-30.807, 0's: 0 Z-trim(106.6): 24 B-trim: 2 in 1/51
Lambda= 0.103668
statistics sampled from 9084 (9096) to 9084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.279), width: 16
Scan time: 3.950
The best scores are: opt bits E(32554)
CCDS3123.1 XRN1 gene_id:54464|Hs108|chr3 (1706) 11598 1748.1 0
CCDS63801.1 XRN1 gene_id:54464|Hs108|chr3 (1694) 10510 1585.4 0
CCDS75028.1 XRN1 gene_id:54464|Hs108|chr3 ( 459) 3050 469.3 1.3e-131
CCDS13144.1 XRN2 gene_id:22803|Hs108|chr20 ( 950) 578 99.8 4.8e-20
>>CCDS3123.1 XRN1 gene_id:54464|Hs108|chr3 (1706 aa)
initn: 11598 init1: 11598 opt: 11598 Z-score: 9377.2 bits: 1748.1 E(32554): 0
Smith-Waterman score: 11598; 100.0% identity (100.0% similar) in 1706 aa overlap (1-1706:1-1706)
10 20 30 40 50 60
pF1KB7 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB7 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB7 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB7 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB7 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB7 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KB7 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KB7 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KB7 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KB7 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH
1630 1640 1650 1660 1670 1680
1690 1700
pF1KB7 KSTPISSSRRKSRKLAVNFGVSKPSE
::::::::::::::::::::::::::
CCDS31 KSTPISSSRRKSRKLAVNFGVSKPSE
1690 1700
>>CCDS63801.1 XRN1 gene_id:54464|Hs108|chr3 (1694 aa)
initn: 10513 init1: 9207 opt: 10510 Z-score: 8497.8 bits: 1585.4 E(32554): 0
Smith-Waterman score: 11450; 99.2% identity (99.2% similar) in 1707 aa overlap (1-1706:1-1694)
10 20 30 40 50 60
pF1KB7 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB7 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB7 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB7 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370
pF1KB7 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAM-GTRMLKEILKIDGSNTVDHKNEIKQ
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS63 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMKGTRMLKEILKIDGSNTVDHKNEIKQ
1330 1340 1350 1360 1370 1380
1380 1390 1400 1410 1420 1430
pF1KB7 IANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPV
1390 1400 1410 1420 1430 1440
1440 1450 1460 1470 1480 1490
pF1KB7 STPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 STPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAAL
1450 1460 1470 1480 1490 1500
1500 1510 1520 1530 1540 1550
pF1KB7 FALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSS
:::::::::::::::::::::::::::::::::::::::: :::::::
CCDS63 FALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPT-------------ANIMPSS
1510 1520 1530 1540
1560 1570 1580 1590 1600 1610
pF1KB7 SHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFE
1550 1560 1570 1580 1590 1600
1620 1630 1640 1650 1660 1670
pF1KB7 NKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISH
1610 1620 1630 1640 1650 1660
1680 1690 1700
pF1KB7 HKSTPISSSRRKSRKLAVNFGVSKPSE
:::::::::::::::::::::::::::
CCDS63 HKSTPISSSRRKSRKLAVNFGVSKPSE
1670 1680 1690
>>CCDS75028.1 XRN1 gene_id:54464|Hs108|chr3 (459 aa)
initn: 3050 init1: 3050 opt: 3050 Z-score: 2476.1 bits: 469.3 E(32554): 1.3e-131
Smith-Waterman score: 3050; 98.9% identity (99.6% similar) in 454 aa overlap (1-454:1-454)
10 20 30 40 50 60
pF1KB7 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
::::::::::::::::::::::::::::. .:.
CCDS75 EDDDLFETEFRQYKRTYYMTKMGVDVVSEYVFANAFILK
430 440 450
490 500 510 520 530 540
pF1KB7 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
>>CCDS13144.1 XRN2 gene_id:22803|Hs108|chr20 (950 aa)
initn: 1648 init1: 453 opt: 578 Z-score: 473.4 bits: 99.8 E(32554): 4.8e-20
Smith-Waterman score: 1609; 40.1% identity (65.4% similar) in 684 aa overlap (1-593:1-677)
10 20 30 40
pF1KB7 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH
:::: :.::.:..:: :. : :: .:: ::::::::::::::
CCDS13 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR
:.::.: . ..:.... ::.:.. :: :..::....::.:::::::::::::.::
CCDS13 PCTHPEDKPAP--KNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR
70 80 90 100 110
110 120 130 140 150
pF1KB7 FRSAKEA------EDKIKKAI-EKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV
::..::. ...... : :: :: : :::::::::::::: : . :.:..
CCDS13 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB7 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM
....: .:...:. .: .:::::::::..:: ..:.:.:::::.::: : ::::::
CCDS13 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM
180 190 200 210 220 230
220 230 240
pF1KB7 LGLTSHEAHFSLLREEVR------------FG--------------GKKTQRV----CAP
:::..:: .:...::: . :: ::. . . ::
CCDS13 LGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCA-
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB7 EETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLH
: : .:.:...:::.. :... .. : .:.:: ::::..: :.:::::.:::: :.
CCDS13 -EGEFIFLRLNVLREYLERELTM--ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLE
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB7 INHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWF
: ..:. : . : ... . :::..:::..:: : . .. ... . :.. : :
CCDS13 IRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSF
360 370 380 390 400 410
370 380 390
pF1KB7 E--SKVGNKYLNE------AAGVAAEEA---RN----------YKEKKKLKGQENS----
. .: : ... .:. . .: :: . ... :.::
CCDS13 RRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSI
420 430 440 450 460 470
400 410 420 430 440 450
pF1KB7 ---LCWTALDKNEGEMITSKDNLED---ETEDDDLFETEFRQYKRTYYMTKMGVDVVSDD
.:. : . . . : . :: : : .: . .:. :: .:. ::....
CCDS13 SPNTSFTS-DGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK
480 490 500 510 520 530
460 470 480 490 500
pF1KB7 FLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELG-KPFK
: . ::... :.:.:::.: ::.::::.::::: ::...:. . :: : ::::
CCDS13 FRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFK
540 550 560 570 580 590
510 520 530 540 550 560
pF1KB7 PFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFI
:.:::..:.:::: :.:: ...::.. :: ::..:: :: :::::. :..:.:.::.
CCDS13 PLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFV
600 610 620 630 640 650
570 580 590 600 610 620
pF1KB7 DEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRY
::.:: :.: .: :: .::
CCDS13 DERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVEVPPE
660 670 680 690 700 710
1706 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:32:11 2016 done: Sat Nov 5 08:32:11 2016
Total Scan time: 3.950 Total Display time: 0.330
Function used was FASTA [36.3.4 Apr, 2011]