FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7267, 321 aa
  1>>>pF1KB7267 321 - 321 aa - 321 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7196+/-0.00111; mu= -7.4704+/- 0.068
 mean_var=566.5100+/-113.681, 0's: 0 Z-trim(117.8): 11  B-trim: 191 in 1/53
 Lambda= 0.053885
 statistics sampled from 18632 (18641) to 18632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.573), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS1985.1 ATOH8 gene_id:84913|Hs108|chr2          ( 321) 2201 184.7 8.3e-47


>>CCDS1985.1 ATOH8 gene_id:84913|Hs108|chr2               (321 aa)
 initn: 2201 init1: 2201 opt: 2201  Z-score: 953.8  bits: 184.7 E(32554): 8.3e-47
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KB7 MKHIPVLEDGPWKTVCVKELNGLKKLKRKGKEPARRANGYKTFRLDLEAPEPRAVATNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MKHIPVLEDGPWKTVCVKELNGLKKLKRKGKEPARRANGYKTFRLDLEAPEPRAVATNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RDRTHRLQPVPVPVPVPVPVAPAVPPRGGTDTAGERGGSRAPEVSDARKRCFALGAVGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 RDRTHRLQPVPVPVPVPVPVAPAVPPRGGTDTAGERGGSRAPEVSDARKRCFALGAVGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LPTPPPPPPPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LPTPPPPPPPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PAPPTRPGESSYSSISHVIYNNHQDSSASPRKRPGEATAASSEIKALQQTRRLLANARER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PAPPTRPGESSYSSISHVIYNNHQDSSASPRKRPGEATAASSEIKALQQTRRLLANARER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLADLDYSADHSNLSFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLADLDYSADHSNLSFS
              250       260       270       280       290       300

              310       320 
pF1KB7 ECVQRCTRTLQAEGRAKKRKE
       :::::::::::::::::::::
CCDS19 ECVQRCTRTLQAEGRAKKRKE
              310       320 




321 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:30:01 2016 done: Fri Nov  4 06:30:02 2016
 Total Scan time:  3.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]