FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7250, 148 aa
  1>>>pF1KB7250 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9383+/-0.000248; mu= 7.5275+/- 0.016
 mean_var=154.7482+/-31.155, 0's: 0 Z-trim(126.0): 2  B-trim: 835 in 1/61
 Lambda= 0.103101
 statistics sampled from 51068 (51072) to 51068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.599), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_001240774 (OMIM: 608682) ADM2 preproprotein [Ho ( 148) 1056 166.8 1.2e-41
XP_016884429 (OMIM: 608682) PREDICTED: ADM2 isofor ( 148) 1056 166.8 1.2e-41


>>NP_001240774 (OMIM: 608682) ADM2 preproprotein [Homo s  (148 aa)
 initn: 1056 init1: 1056 opt: 1056  Z-score: 869.0  bits: 166.8 E(85289): 1.2e-41
Smith-Waterman score: 1056; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB7 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL
               70        80        90       100       110       120

              130       140        
pF1KB7 SHRLWQLMGPAGRQDSAPVDPSSPHSYG
       ::::::::::::::::::::::::::::
NP_001 SHRLWQLMGPAGRQDSAPVDPSSPHSYG
              130       140        

>>XP_016884429 (OMIM: 608682) PREDICTED: ADM2 isoform X1  (148 aa)
 initn: 1056 init1: 1056 opt: 1056  Z-score: 869.0  bits: 166.8 E(85289): 1.2e-41
Smith-Waterman score: 1056; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB7 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL
               70        80        90       100       110       120

              130       140        
pF1KB7 SHRLWQLMGPAGRQDSAPVDPSSPHSYG
       ::::::::::::::::::::::::::::
XP_016 SHRLWQLMGPAGRQDSAPVDPSSPHSYG
              130       140        




148 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:20:44 2016 done: Fri Nov  4 06:20:45 2016
 Total Scan time:  6.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]