FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7249, 123 aa
  1>>>pF1KB7249 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8197+/-0.00083; mu= 12.5034+/- 0.051
 mean_var=52.3777+/-11.134, 0's: 0 Z-trim(106.0): 59  B-trim: 586 in 2/50
 Lambda= 0.177215
 statistics sampled from 8655 (8724) to 8655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS59474.1 ARL9 gene_id:132946|Hs108|chr4         ( 123)  793 210.2 2.5e-55
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5         ( 244)  304 85.4   2e-17


>>CCDS59474.1 ARL9 gene_id:132946|Hs108|chr4              (123 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1106.7  bits: 210.2 E(32554): 2.5e-55
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB7 MEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPVLPLVVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPVLPLVVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ANKQDLEAAYHITDIHEALALSEVGNDRKMFLFGTYLTKNGSEIPSTMQDAKDLIAQLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ANKQDLEAAYHITDIHEALALSEVGNDRKMFLFGTYLTKNGSEIPSTMQDAKDLIAQLAA
               70        80        90       100       110       120

          
pF1KB7 DVQ
       :::
CCDS59 DVQ
          

>>CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5              (244 aa)
 initn: 324 init1: 291 opt: 304  Z-score: 426.4  bits: 85.4 E(32554): 2e-17
Smith-Waterman score: 304; 41.3% identity (74.4% similar) in 121 aa overlap (1-119:124-244)

                                             10        20        30
pF1KB7                               MEFLEIGGSKPFRSYWEMYLSKGLLLIFVV
                                     ...::::::. .: ::. ..:.  .:.:::
CCDS44 LRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVV
           100       110       120       130       140       150   

               40        50        60        70        80        90
pF1KB7 DSADHSRLPEAKKYLHQLIAANPVLPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKM
       ::::. ::: :.. ::.:.  .: ::.:: ::::::  :. . .... :.:. . :.:..
CCDS44 DSADRLRLPWARQELHKLLDKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQREV
           160       170       180       190       200       210   

              100         110       120   
pF1KB7 FLFGTYLTKNGS--EIPSTMQDAKDLIAQLAADVQ
       ::... ..  :   : :.:..  : :.  :.    
CCDS44 FLLAASIAPAGPTFEEPGTVHIWKLLLELLS    
           220       230       240        




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:20:15 2016 done: Fri Nov  4 06:20:16 2016
 Total Scan time:  1.610 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]