FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7242, 184 aa
  1>>>pF1KB7242 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9792+/-0.000875; mu= 13.7552+/- 0.053
 mean_var=51.5034+/-10.346, 0's: 0 Z-trim(104.3): 21  B-trim: 0 in 0/49
 Lambda= 0.178713
 statistics sampled from 7812 (7825) to 7812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.24), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS33215.1 GKN2 gene_id:200504|Hs108|chr2         ( 184) 1233 325.6 1.1e-89
CCDS1891.2 GKN1 gene_id:56287|Hs108|chr2           ( 199)  277 79.1 1.8e-15


>>CCDS33215.1 GKN2 gene_id:200504|Hs108|chr2              (184 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1723.9  bits: 325.6 E(32554): 1.1e-89
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB7 MKILVAFLVVLTIFGIQSHGYEVFNIISPSNNGGNVQETVTIDNEKNTAIINIHAGSCSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKILVAFLVVLTIFGIQSHGYEVFNIISPSNNGGNVQETVTIDNEKNTAIINIHAGSCSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TTIFDYKHGYIASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQALDNMFSSKYTWVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TTIFDYKHGYIASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQALDNMFSSKYTWVKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NPLESLIKDVDWFLLGSPIEKLCKHIPLYKGEVVENTHNVGAGGCAKAGLLGILGISICA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NPLESLIKDVDWFLLGSPIEKLCKHIPLYKGEVVENTHNVGAGGCAKAGLLGILGISICA
              130       140       150       160       170       180

           
pF1KB7 DIHV
       ::::
CCDS33 DIHV
           

>>CCDS1891.2 GKN1 gene_id:56287|Hs108|chr2                (199 aa)
 initn: 184 init1: 184 opt: 277  Z-score: 391.2  bits: 79.1 E(32554): 1.8e-15
Smith-Waterman score: 277; 27.6% identity (64.9% similar) in 185 aa overlap (1-181:15-195)

                             10        20        30        40      
pF1KB7               MKILVAFLVVLTIFGIQSHGYEVFNIISPSNNGGNVQETVTIDNEK
                     ::. ..:  .: .:   . .   .:. . .::.:. :..:...::.
CCDS18 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KB7 NTAIINIHAGSCSSTTIFDYKHGYIASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQA
       :.: .. . :  : ..:.:: .:. :.:......:.. ::... .: ...:.  . ::. 
CCDS18 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
               70        80        90       100       110       120

        110          120       130       140       150        160  
pF1KB7 LDNMFSS---KYTWVKYNPLESLIKDVDWFLLGSPIEKLCKHIPLYKGEVV-ENTHNVGA
         .  ..   :    . ::  . . :.. :  :. : ..:. :: : .: . : .    .
CCDS18 QGKGPGGPPPKGLMYSVNP--NKVDDLSKF--GKNIANMCRGIPTYMAEEMQEASLFFYS
              130         140         150       160       170      

            170       180     
pF1KB7 GGCAKAGLLGILGISICADIHV 
       : :  ...: :. ::.:.:    
CCDS18 GTCYTTSVLWIVDISFCGDTVEN
        180       190         




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:15:09 2016 done: Fri Nov  4 06:15:09 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]