Result of FASTA (ccds) for
pF1KB7238
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7238, 118 aa
1>>>pF1KB7238 118 - 118 aa - 118 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2245+/-0.000709; mu= 6.1844+/- 0.044
mean_var=223.1141+/-43.186, 0's: 0 Z-trim(119.2): 63 B-trim: 46 in 1/54
Lambda= 0.085864
statistics sampled from 20326 (20389) to 20326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.626), width: 16
Scan time: 1.590
The best scores are: opt bits E(32554)
CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 ( 118) 988 132.6 5.4e-32
CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 ( 118) 934 125.9 5.6e-30
CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 ( 118) 928 125.2 9.3e-30
CCDS1027.1 LCE1B gene_id:353132|Hs108|chr1 ( 118) 901 121.8 9.5e-29
CCDS1025.1 LCE1D gene_id:353134|Hs108|chr1 ( 114) 848 115.3 8.8e-27
CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 ( 110) 835 113.6 2.6e-26
CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 ( 110) 648 90.5 2.5e-19
CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 ( 118) 640 89.5 5.1e-19
CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 ( 110) 630 88.2 1.2e-18
CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 ( 106) 627 87.8 1.5e-18
CCDS1019.1 LCE2C gene_id:353140|Hs108|chr1 ( 110) 626 87.7 1.6e-18
>>CCDS1023.1 LCE1F gene_id:353137|Hs108|chr1 (118 aa)
initn: 988 init1: 988 opt: 988 Z-score: 687.9 bits: 132.6 E(32554): 5.4e-32
Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1024.1 LCE1E gene_id:353135|Hs108|chr1 (118 aa)
initn: 934 init1: 934 opt: 934 Z-score: 651.7 bits: 125.9 E(32554): 5.6e-30
Smith-Waterman score: 934; 94.1% identity (99.2% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::..:::::::::::::::::.:::::::::::::::::
CCDS10 GSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1026.1 LCE1C gene_id:353133|Hs108|chr1 (118 aa)
initn: 928 init1: 928 opt: 928 Z-score: 647.7 bits: 125.2 E(32554): 9.3e-30
Smith-Waterman score: 928; 94.1% identity (97.5% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::::::: :::::: ::::::.:::::::::::::::::
CCDS10 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1027.1 LCE1B gene_id:353132|Hs108|chr1 (118 aa)
initn: 901 init1: 901 opt: 901 Z-score: 629.6 bits: 121.8 E(32554): 9.5e-29
Smith-Waterman score: 901; 90.7% identity (95.8% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::::::: ::.:::::::::::::::::::::::::::::: :
CCDS10 MSCQQNQQQCQPPPKCIPKCPPKCLTPRCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::::::: :::::: ::::::.:::::::::::::::::
CCDS10 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>CCDS1025.1 LCE1D gene_id:353134|Hs108|chr1 (114 aa)
initn: 719 init1: 719 opt: 848 Z-score: 594.3 bits: 115.3 E(32554): 8.8e-27
Smith-Waterman score: 848; 88.1% identity (94.9% similar) in 118 aa overlap (1-118:1-114)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::: ::::.:::::: :::::::::::::::::::::: :
CCDS10 MSCQQSQQQCQPPPKCTPKCTPKCPAPKCPPK----CPPVSSCCSVSSGGCCGSSSGGGC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..::::::::::::::::::.::::.::::::::::::.:::::::::.:::::::
CCDS10 GSNSGGCCSSGGGGCCLSHHRRHRSHRRRPQSSDCCSQPSGGSSCCGGGSSQHSGGCC
60 70 80 90 100 110
>>CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 (110 aa)
initn: 786 init1: 571 opt: 835 Z-score: 585.8 bits: 113.6 E(32554): 2.6e-26
Smith-Waterman score: 835; 89.0% identity (90.7% similar) in 118 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGG--
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
:: ::::::::::::::.:::::: ::: ::::::.::::::: :::::::::
CCDS10 -----GC-SSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSGGSSCCGGDSGQHSGGCC
60 70 80 90 100 110
>>CCDS1018.1 LCE2D gene_id:353141|Hs108|chr1 (110 aa)
initn: 553 init1: 410 opt: 648 Z-score: 460.6 bits: 90.5 E(32554): 2.5e-19
Smith-Waterman score: 648; 67.2% identity (80.7% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::: :::: :::::::::.:: . :: . ..::: :::.::
CCDS10 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCPPQCP---APCSPAVSSCCGPSSGSCC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCC-SQPSAGSSCCGGGSGQHSGGCC
. ..::::::::::::::::: : ::.: :: ::: :.::..:.:: . :::::
CCDS10 GPSSGGCCSSGGGGCCLSHHRPRLFHRRRHQSPDCCESEPSGASGCC-----HSSGGCC
60 70 80 90 100 110
>>CCDS1011.1 LCE5A gene_id:254910|Hs108|chr1 (118 aa)
initn: 398 init1: 398 opt: 640 Z-score: 454.9 bits: 89.5 E(32554): 5.1e-19
Smith-Waterman score: 640; 69.3% identity (77.2% similar) in 127 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..:::::::::
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS----QPSAGSSCC--GGGSG--
::: :: :::::::: :.: :.:::::.::. : :.::::: .::::
CCDS10 CSSEGG--------GCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCC
60 70 80 90 100 110
pF1KB7 QHSGGCC
. :::::
CCDS10 HSSGGCC
>>CCDS1020.1 LCE2B gene_id:26239|Hs108|chr1 (110 aa)
initn: 532 init1: 399 opt: 630 Z-score: 448.5 bits: 88.2 E(32554): 1.2e-18
Smith-Waterman score: 630; 65.5% identity (79.0% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::: :::: ::::::: :.:: . :: . ..::: :::::
CCDS10 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCP---APCSPAVSSCCGPISGGCC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCC-SQPSAGSSCCGGGSGQHSGGCC
. ..::::.::.::::::::: : ::.: :: ::: :.::.::.:: . :::::
CCDS10 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
60 70 80 90 100 110
>>CCDS1021.1 LCE2A gene_id:353139|Hs108|chr1 (106 aa)
initn: 456 init1: 456 opt: 627 Z-score: 446.7 bits: 87.8 E(32554): 1.5e-18
Smith-Waterman score: 645; 70.0% identity (75.8% similar) in 120 aa overlap (1-118:1-106)
10 20 30 40 50
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
:::::.:::::::::: :::::::: ::: :.:: ::: :::::. :::::::::::::
CCDS10 MSCQQNQQQCQPPPKCPPKCPPKCP-PKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS-QPSAGSSCCGGGSGQHSGGCC
:::::: :::::::: : :::: :: ::: .::.::.:: . :: ::
CCDS10 CSSGGG--------GCCLSHHRPRLFHRHRHQSPDCCECEPSGGSGCC-----HSSGDCC
60 70 80 90 100
118 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:13:06 2016 done: Fri Nov 4 06:13:06 2016
Total Scan time: 1.590 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]