FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7229, 373 aa
  1>>>pF1KB7229 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2583+/-0.000858; mu= 16.8789+/- 0.051
 mean_var=65.9763+/-13.213, 0's: 0 Z-trim(107.0): 18  B-trim: 196 in 1/51
 Lambda= 0.157899
 statistics sampled from 9304 (9317) to 9304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS5586.1 ZP3 gene_id:7784|Hs108|chr7             ( 373) 2540 587.4 6.8e-168
CCDS47618.1 ZP3 gene_id:7784|Hs108|chr7            ( 424) 2540 587.4 7.5e-168
CCDS43606.1 POMZP3 gene_id:22932|Hs108|chr7        ( 187)  759 181.5 5.2e-46
CCDS5590.1 POMZP3 gene_id:22932|Hs108|chr7         ( 115)  269 69.8 1.4e-12


>>CCDS5586.1 ZP3 gene_id:7784|Hs108|chr7                  (373 aa)
 initn: 2540 init1: 2540 opt: 2540  Z-score: 3127.7  bits: 587.4 E(32554): 6.8e-168
Smith-Waterman score: 2540; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB7 MVMVSKDLFGTGKLIRAADLTLGPEACEPLVSMDTEDVVRFEVGLHECGNSMQVTDDALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVMVSKDLFGTGKLIRAADLTLGPEACEPLVSMDTEDVVRFEVGLHECGNSMQVTDDALV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YSTFLLHDPRPVGNLSIVRTNRAEIPIECRYPRQGNVSSQAILPTWLPFRTTVFSEEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YSTFLLHDPRPVGNLSIVRTNRAEIPIECRYPRQGNVSSQAILPTWLPFRTTVFSEEKLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FSLRLMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLFVDHCVATPTPDQNASPYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FSLRLMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLFVDHCVATPTPDQNASPYH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TIVDFHGCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNMIYITCHLKVTLAEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TIVDFHGCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNMIYITCHLKVTLAEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DPDELNKACSFSKPSNSWFPVEGSADICQCCNKGDCGTPSHSRRQPHVMSQWSRSASRNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPDELNKACSFSKPSNSWFPVEGSADICQCCNKGDCGTPSHSRRQPHVMSQWSRSASRNR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RHVTEEADVTVGPLIFLDRRGDHEVEQWALPSDTSVVLLGVGLAVVVSLTLTAVILVLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHVTEEADVTVGPLIFLDRRGDHEVEQWALPSDTSVVLLGVGLAVVVSLTLTAVILVLTR
              310       320       330       340       350       360

              370   
pF1KB7 RCRTASHPVSASE
       :::::::::::::
CCDS55 RCRTASHPVSASE
              370   

>>CCDS47618.1 ZP3 gene_id:7784|Hs108|chr7                 (424 aa)
 initn: 2540 init1: 2540 opt: 2540  Z-score: 3126.9  bits: 587.4 E(32554): 7.5e-168
Smith-Waterman score: 2540; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:52-424)

                                             10        20        30
pF1KB7                               MVMVSKDLFGTGKLIRAADLTLGPEACEPL
                                     ::::::::::::::::::::::::::::::
CCDS47 PQPLWLLQGGASHPETSVQPVLVECQEATLMVMVSKDLFGTGKLIRAADLTLGPEACEPL
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KB7 VSMDTEDVVRFEVGLHECGNSMQVTDDALVYSTFLLHDPRPVGNLSIVRTNRAEIPIECR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VSMDTEDVVRFEVGLHECGNSMQVTDDALVYSTFLLHDPRPVGNLSIVRTNRAEIPIECR
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KB7 YPRQGNVSSQAILPTWLPFRTTVFSEEKLTFSLRLMEENWNAEKRSPTFHLGDAAHLQAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YPRQGNVSSQAILPTWLPFRTTVFSEEKLTFSLRLMEENWNAEKRSPTFHLGDAAHLQAE
             150       160       170       180       190       200 

              160       170       180       190       200       210
pF1KB7 IHTGSHVPLRLFVDHCVATPTPDQNASPYHTIVDFHGCLVDGLTDASSAFKVPRPGPDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IHTGSHVPLRLFVDHCVATPTPDQNASPYHTIVDFHGCLVDGLTDASSAFKVPRPGPDTL
             210       220       230       240       250       260 

              220       230       240       250       260       270
pF1KB7 QFTVDVFHFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSNSWFPVEGSADICQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QFTVDVFHFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSNSWFPVEGSADICQC
             270       280       290       300       310       320 

              280       290       300       310       320       330
pF1KB7 CNKGDCGTPSHSRRQPHVMSQWSRSASRNRRHVTEEADVTVGPLIFLDRRGDHEVEQWAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CNKGDCGTPSHSRRQPHVMSQWSRSASRNRRHVTEEADVTVGPLIFLDRRGDHEVEQWAL
             330       340       350       360       370       380 

              340       350       360       370   
pF1KB7 PSDTSVVLLGVGLAVVVSLTLTAVILVLTRRCRTASHPVSASE
       :::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSDTSVVLLGVGLAVVVSLTLTAVILVLTRRCRTASHPVSASE
             390       400       410       420    

>>CCDS43606.1 POMZP3 gene_id:22932|Hs108|chr7             (187 aa)
 initn: 759 init1: 759 opt: 759  Z-score: 939.5  bits: 181.5 E(32554): 5.2e-46
Smith-Waterman score: 759; 96.4% identity (98.2% similar) in 110 aa overlap (188-297:77-186)

       160       170       180       190       200       210       
pF1KB7 PLRLFVDHCVATPTPDQNASPYHTIVDFHGCLVDGLTDASSAFKVPRPGPDTLQFTVDVF
                                     ::::::::::::::::::::::::::::::
CCDS43 VLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVF
         50        60        70        80        90       100      

       220       230       240       250       260       270       
pF1KB7 HFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSNSWFPVEGSADICQCCNKGDCG
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS43 HFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSNSWFPVEGLADICQCCNKGDCG
        110       120       130       140       150       160      

       280       290       300       310       320       330       
pF1KB7 TPSHSRRQPHVMSQWSRSASRNRRHVTEEADVTVGPLIFLDRRGDHEVEQWALPSDTSVV
       :::::::::.:.:::: :::                                        
CCDS43 TPSHSRRQPRVVSQWSTSASL                                       
        170       180                                              

>>CCDS5590.1 POMZP3 gene_id:22932|Hs108|chr7              (115 aa)
 initn: 269 init1: 269 opt: 269  Z-score: 339.4  bits: 69.8 E(32554): 1.4e-12
Smith-Waterman score: 269; 100.0% identity (100.0% similar) in 39 aa overlap (188-226:77-115)

       160       170       180       190       200       210       
pF1KB7 PLRLFVDHCVATPTPDQNASPYHTIVDFHGCLVDGLTDASSAFKVPRPGPDTLQFTVDVF
                                     ::::::::::::::::::::::::::::::
CCDS55 VLSALKEKKKKRTVEEEDQIFLDGQENKRSCLVDGLTDASSAFKVPRPGPDTLQFTVDVF
         50        60        70        80        90       100      

       220       230       240       250       260       270       
pF1KB7 HFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSNSWFPVEGSADICQCCNKGDCG
       :::::::::                                                   
CCDS55 HFANDSRNM                                                   
        110                                                        




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:07:18 2016 done: Fri Nov  4 06:07:19 2016
 Total Scan time:  2.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]