Result of FASTA (ccds) for
pF1KB7227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7227, 220 aa
1>>>pF1KB7227 220 - 220 aa - 220 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3817+/-0.000831; mu= 13.2927+/- 0.050
mean_var=62.5773+/-12.503, 0's: 0 Z-trim(105.9): 26 B-trim: 0 in 0/54
Lambda= 0.162131
statistics sampled from 8648 (8668) to 8648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.266), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18 ( 220) 1477 353.9 4.7e-98
CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15 ( 213) 483 121.4 4.4e-28
CCDS4104.1 STARD4 gene_id:134429|Hs108|chr5 ( 205) 379 97.0 9e-21
CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17 ( 427) 281 74.3 1.4e-13
CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17 ( 445) 281 74.3 1.4e-13
CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17 ( 445) 281 74.3 1.4e-13
CCDS6102.1 STAR gene_id:6770|Hs108|chr8 ( 285) 275 72.8 2.5e-13
>>CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18 (220 aa)
initn: 1477 init1: 1477 opt: 1477 Z-score: 1873.9 bits: 353.9 E(32554): 4.7e-98
Smith-Waterman score: 1477; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPESPAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLS
130 140 150 160 170 180
190 200 210 220
pF1KB7 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
::::::::::::::::::::::::::::::::::::::::
CCDS11 PSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
190 200 210 220
>>CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15 (213 aa)
initn: 475 init1: 336 opt: 483 Z-score: 617.6 bits: 121.4 E(32554): 4.4e-28
Smith-Waterman score: 483; 34.4% identity (65.1% similar) in 209 aa overlap (1-204:1-209)
10 20 30 40 50
pF1KB7 MDFKAIAQQT---AQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIPES
:: ::.. :...: : :::.:::. . .. ..:: . : .: ::::: :::. .
CCDS10 MDPALAAQMSEAVAEKMLQYRRDTAGWKICREGNGVSVSWRPSVEFPGNLYRGEGIVYGT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PAKLSDFLYQT--GDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLV
.. : . . : :. ::... ..... : . . .: : : :. ::::::.:::
CCDS10 LEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 YIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEM
.:::: . .. :. : ::. ...::.::::: : :. .:. ..:: : .:..
CCDS10 LVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDL
130 140 150 160 170 180
180 190 200 210 220
pF1KB7 RGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
: : ..... .: ... : : . ..:
CCDS10 SGYLPQNVVDSFFPRSMTRFYANLQKAVKQFHE
190 200 210
>>CCDS4104.1 STARD4 gene_id:134429|Hs108|chr5 (205 aa)
initn: 324 init1: 203 opt: 379 Z-score: 486.4 bits: 97.0 E(32554): 9e-21
Smith-Waterman score: 379; 29.7% identity (63.6% similar) in 195 aa overlap (2-195:6-197)
10 20 30 40 50
pF1KB7 MDFKAIAQQTAQEVLGYNR-DTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGIIP
: ..: . . .. :. . . :.:.: .: .:: : :..:.: ::...:.:
CCDS41 MEGLSDVASFATKLKNTLIQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVID
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLV
. .. : . :. ::. . .... .. . . . : . . ::::.:.:.
CCDS41 DLVYSIIDHIRPGPCRLDWDSLMTSLDILENFEENCCVMRYTTAGQLWNIISPREFVDFS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 YIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEM
: :. .. . . :.:. : : ...::::::::. : :...:: : :. ..::..
CCDS41 YTVGYKEGL-LSCGISLDWDEKRP--EFVRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDL
130 140 150 160 170
180 190 200 210 220
pF1KB7 RGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
:: . : .. .: :.:.::
CCDS41 RGMIPQSAVDTAMASTLTNFYGDLRKAL
180 190 200
>>CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17 (427 aa)
initn: 183 init1: 86 opt: 281 Z-score: 357.5 bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:241-420)
10 20 30 40 50
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
:: :... . :::. . .. .
CCDS54 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
220 230 240 250 260 270
60 70 80 90 100 110
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
.: ::.: .. . : . :.:.. . ....:....:.: . .. . : : .:::::
CCDS54 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
280 290 300 310 320
120 130 140 150 160 170
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
... :.: . . . :. ... ::. .:.:: : : ::. :: .: ..
CCDS54 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
330 340 350 360 370 380
180 190 200 210 220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
.:...:.: .:.... ... .: .. .. :
CCDS54 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
390 400 410 420
>>CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17 (445 aa)
initn: 183 init1: 86 opt: 281 Z-score: 357.2 bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:259-438)
10 20 30 40 50
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
:: :... . :::. . .. .
CCDS11 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
230 240 250 260 270 280
60 70 80 90 100 110
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
.: ::.: .. . : . :.:.. . ....:....:.: . .. . : : .:::::
CCDS11 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
290 300 310 320 330 340
120 130 140 150 160 170
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
... :.: . . . :. ... ::. .:.:: : : ::. :: .: ..
CCDS11 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
350 360 370 380 390 400
180 190 200 210 220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
.:...:.: .:.... ... .: .. .. :
CCDS11 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
410 420 430 440
>>CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17 (445 aa)
initn: 183 init1: 86 opt: 281 Z-score: 357.2 bits: 74.3 E(32554): 1.4e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (24-203:259-438)
10 20 30 40 50
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
:: :... . :::. . .. .
CCDS54 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
230 240 250 260 270 280
60 70 80 90 100 110
pF1KB7 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
.: ::.: .. . : . :.:.. . ....:....:.: . .. . : : .:::::
CCDS54 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
290 300 310 320 330 340
120 130 140 150 160 170
pF1KB7 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
... :.: . . . :. ... ::. .:.:: : : ::. :: .: ..
CCDS54 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
350 360 370 380 390 400
180 190 200 210 220
pF1KB7 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
.:...:.: .:.... ... .: .. .. :
CCDS54 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
410 420 430 440
>>CCDS6102.1 STAR gene_id:6770|Hs108|chr8 (285 aa)
initn: 241 init1: 119 opt: 275 Z-score: 352.7 bits: 72.8 E(32554): 2.5e-13
Smith-Waterman score: 275; 23.8% identity (63.9% similar) in 202 aa overlap (8-206:80-278)
10 20 30
pF1KB7 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSS
... :..:: . ::: : :.. . ..
CCDS61 NQVRRRSSLLGSRLEETLYSDQELAYLQQGEEAMQKALGILSNQEGWK--KESQQDNGDK
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 KASRKFH--GNLYRVEGIIPESPAKLSDFLYQTGDRI-TWDKSLQVYNMVHRIDSDTFIC
:. :...:.: .. . .: . : . . . :. ... .....: .::::
CCDS61 VMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFIT
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB7 HTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFV
: .. : . ..::::... :: .:. .... ..:: ..: ... ::. . : .:
CCDS61 HELAAEAAGNLVGPRDFVSVRCAKR-RGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMV
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB7 CSPMEENPAYSKLVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGF
:. .:. .::. ... ...: : :::.... .. :.: . . ...:
CCDS61 LHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLESHPASEARC
230 240 250 260 270 280
220
pF1KB7 HHNSHS
220 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:44:01 2016 done: Sat Nov 5 09:44:01 2016
Total Scan time: 2.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]