Result of FASTA (ccds) for
pF1KB7213
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7213, 142 aa
1>>>pF1KB7213 142 - 142 aa - 142 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7140+/-0.000691; mu= 15.0543+/- 0.041
mean_var=74.1098+/-14.378, 0's: 0 Z-trim(111.0): 20 B-trim: 43 in 1/50
Lambda= 0.148983
statistics sampled from 12030 (12040) to 12030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.37), width: 16
Scan time: 1.520
The best scores are: opt bits E(32554)
CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 ( 142) 1058 235.7 7.3e-63
CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 ( 144) 487 113.0 6.5e-26
CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 ( 138) 428 100.3 4.1e-22
CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 ( 145) 427 100.1 4.9e-22
CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 ( 211) 422 99.2 1.4e-21
CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 ( 165) 397 93.7 4.7e-20
CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 ( 148) 308 74.5 2.5e-14
CCDS47919.1 OC90 gene_id:729330|Hs108|chr8 ( 477) 277 68.4 5.8e-12
>>CCDS200.1 PLA2G2E gene_id:30814|Hs108|chr1 (142 aa)
initn: 1058 init1: 1058 opt: 1058 Z-score: 1242.1 bits: 235.7 E(32554): 7.3e-63
Smith-Waterman score: 1058; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNL
70 80 90 100 110 120
130 140
pF1KB7 GTYNRKYAHYPNKLCTGPTPPC
::::::::::::::::::::::
CCDS20 GTYNRKYAHYPNKLCTGPTPPC
130 140
>>CCDS201.1 PLA2G2A gene_id:5320|Hs108|chr1 (144 aa)
initn: 500 init1: 440 opt: 487 Z-score: 578.8 bits: 113.0 E(32554): 6.5e-26
Smith-Waterman score: 487; 53.6% identity (67.4% similar) in 138 aa overlap (6-142:9-144)
10 20 30 40 50
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGK-SALQYNDYGCYCGIGGSHWPVD
:.... :: : ::::.: ::. ::: .::.:. :::.::.:: : :
CCDS20 MKTLLLLAVIMIFGLLQA--HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKD
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 QTDWCCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCF
:: :: .::::: :::: :: :. .: :: : : :: . .:. ::::: :: ::
CCDS20 ATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF
60 70 80 90 100 110
120 130 140
pF1KB7 RRNLGTYNRKYAHYPNKLCTGPTPPC
:: :::.:: .: :: : : :: :
CCDS20 ARNKTTYNKKYQYYSNKHCRGSTPRC
120 130 140
>>CCDS202.1 PLA2G5 gene_id:5322|Hs108|chr1 (138 aa)
initn: 445 init1: 358 opt: 428 Z-score: 510.5 bits: 100.3 E(32554): 4.1e-22
Smith-Waterman score: 428; 45.7% identity (66.7% similar) in 129 aa overlap (9-136:10-138)
10 20 30 40 50
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSAL-QYNDYGCYCGIGGSHWPVDQT
:: : : :.:... ::::.:::.:: .:. :::::: :: : : :
CCDS20 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DWCCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRR
:::: ::: ::::::. ::. . ..: . . . : :. : ::.. . :..:
CCDS20 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR
70 80 90 100 110 120
120 130 140
pF1KB7 NLGTYNRKYAHYPNKLCTGPTPPC
:: .:: .: ..:: ::.
CCDS20 NLRSYNPQYQYFPNILCS
130
>>CCDS203.1 PLA2G2D gene_id:26279|Hs108|chr1 (145 aa)
initn: 351 init1: 210 opt: 427 Z-score: 509.0 bits: 100.1 E(32554): 4.9e-22
Smith-Waterman score: 427; 39.2% identity (67.1% similar) in 143 aa overlap (7-142:3-145)
10 20 30 40 50
pF1KB7 MKSPHVLVFLCLLVAL-----VTGNLVQFGVMIEKMTGK-SALQYNDYGCYCGIGGSHWP
:..:: ::.. . :...... :....::: :.: :::.::.:: :
CCDS20 MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQP
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VDQTDWCCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTT-CQRLTCECDKRAA
: :::::..::::: .:. :: . : .. :. .: :. . . :.. : :::..:
CCDS20 KDATDWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVA
60 70 80 90 100 110
120 130 140
pF1KB7 LCFRRNLGTYNRKYAHYPNKLCTGPTPPC
.:..::: ::... : : : :: :
CCDS20 FCLKRNLDTYQKRLRFYWRPHCRGQTPGC
120 130 140
>>CCDS204.2 PLA2G2F gene_id:64600|Hs108|chr1 (211 aa)
initn: 413 init1: 242 opt: 422 Z-score: 501.2 bits: 99.2 E(32554): 1.4e-21
Smith-Waterman score: 422; 43.8% identity (69.5% similar) in 128 aa overlap (19-142:63-188)
10 20 30 40
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSA-LQYNDYGCYCG
:.:... .:.: .::.:: :.. ::::::
CCDS20 CPSRTSRSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCG
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB7 IGGSHWPVDQTDWCCHAHDCCYGRLEKLGCEPKLEKYLFSV-SERGIFCA--GRTTCQRL
.:: : :..::::::::::: .: ::.: ...: .. .. : :. ..: :..
CCDS20 LGGRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQ
100 110 120 130 140 150
110 120 130 140
pF1KB7 TCECDKRAALCFRRNLGTYNRKYAHYPNKLCTGPTPPC
:: ::: .::. . :: ..: . : : :::: :
CCDS20 TCMCDKNMVLCLMNQ--TYREEYRGFLNVYCQGPTPNCSIYEPPPEEVTCSHQSPAPPAP
160 170 180 190 200 210
CCDS20 P
>>CCDS10555.1 PLA2G10 gene_id:8399|Hs108|chr16 (165 aa)
initn: 396 init1: 252 opt: 397 Z-score: 473.5 bits: 93.7 E(32554): 4.7e-20
Smith-Waterman score: 397; 42.7% identity (68.2% similar) in 110 aa overlap (34-142:57-164)
10 20 30 40 50 60
pF1KB7 PHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDWCCH
.. . : :::.::.:: : : :::::
CCDS10 GPGSGEASRILRVHRRGILELAGTVGCVGPRTPIAYMKYGCFCGLGGHGQPRDAIDWCCH
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB7 AHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCA-GRTTCQRLTCECDKRAALCFRRNLGT
.::::: : :. :: :: :.: .. .....:. ... ::.: :.::.. : :. ..
CCDS10 GHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCKCDQEIANCLAQT--E
90 100 110 120 130 140
130 140
pF1KB7 YNRKYAHYPNKLCTGPTPPC
:: :: ::. :: .: :
CCDS10 YNLKYLFYPQFLCEPDSPKCD
150 160
>>CCDS9195.1 PLA2G1B gene_id:5319|Hs108|chr12 (148 aa)
initn: 258 init1: 202 opt: 308 Z-score: 370.7 bits: 74.5 E(32554): 2.5e-14
Smith-Waterman score: 308; 39.2% identity (64.2% similar) in 120 aa overlap (23-133:26-143)
10 20 30 40 50
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSA--LQYNDYGCYCGIGGSHWPV
:: ::. . : :.::.::::::.::: ::
CCDS91 MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPV
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 DQTDWCCHAHDCCYGRLEKL-GCE-----PKLEKYLFSVSERGIFCAGRTT-CQRLTCEC
:. : ::..:: :: . .:: .:. : . : .: : .: :.... :. . :.:
CCDS91 DELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNC
70 80 90 100 110 120
110 120 130 140
pF1KB7 DKRAALCFRRNLGTYNRKYAHYPNKLCTGPTPPC
:. ::.:: . . ::. . . .:
CCDS91 DRNAAICFSK--APYNKAHKNLDTKKYCQS
130 140
>>CCDS47919.1 OC90 gene_id:729330|Hs108|chr8 (477 aa)
initn: 203 init1: 165 opt: 277 Z-score: 328.3 bits: 68.4 E(32554): 5.8e-12
Smith-Waterman score: 277; 33.1% identity (60.5% similar) in 124 aa overlap (23-142:307-425)
10 20 30 40 50
pF1KB7 MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSH
:.: :. .:.. ....:::::: :
CCDS47 ENDPEETTEKACDRFTFLHLGSGDNMQVMPQLGEMLFCLTSRCPEEFESYGCYCGQEGRG
280 290 300 310 320 330
60 70 80 90 100
pF1KB7 WPVDQTDWCCHAHDCCYGRLEKLGCEPKLEKYLFS---VSERGIFCAGRTTCQRLTCECD
: :. : :: .: :: ....::: ::. .: .. :.:.. :..: : ::
CCDS47 EPRDDLDRCCLSHHCCLEQVRRLGCL--LERLPWSPVVCVDHTPKCGGQSLCEKLLCACD
340 350 360 370 380 390
110 120 130 140
pF1KB7 KRAALCFRRNLGTYNRKYAHYPNKL-CTGPTPPC
. :: :. ...:.. . :..: : : :
CCDS47 QTAAECMTS--ASFNQSL-KSPSRLGCPGQPAACEDSLHPVPAAPTLGSSSEEDSEEDPP
400 410 420 430 440 450
CCDS47 QEDLGRAKRFLRKSLGPLGIGPLHGR
460 470
142 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:01:15 2016 done: Fri Nov 4 06:01:16 2016
Total Scan time: 1.520 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]