Result of FASTA (ccds) for
pF1KB7202
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7202, 241 aa
1>>>pF1KB7202 241 - 241 aa - 241 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9374+/-0.000609; mu= 13.4250+/- 0.037
mean_var=103.1471+/-20.579, 0's: 0 Z-trim(115.5): 7 B-trim: 11 in 1/51
Lambda= 0.126283
statistics sampled from 16087 (16094) to 16087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.494), width: 16
Scan time: 2.800
The best scores are: opt bits E(32554)
CCDS4715.1 C6orf25 gene_id:80739|Hs108|chr6 ( 241) 1669 313.4 8.8e-86
CCDS34407.1 C6orf25 gene_id:80739|Hs108|chr6 ( 222) 1277 241.9 2.6e-64
CCDS34406.1 C6orf25 gene_id:80739|Hs108|chr6 ( 237) 1277 241.9 2.7e-64
CCDS4716.1 C6orf25 gene_id:80739|Hs108|chr6 ( 217) 965 185.1 3.3e-47
CCDS4717.1 C6orf25 gene_id:80739|Hs108|chr6 ( 193) 959 183.9 6.5e-47
CCDS34405.1 C6orf25 gene_id:80739|Hs108|chr6 ( 197) 956 183.4 9.6e-47
>>CCDS4715.1 C6orf25 gene_id:80739|Hs108|chr6 (241 aa)
initn: 1669 init1: 1669 opt: 1669 Z-score: 1653.6 bits: 313.4 E(32554): 8.8e-86
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
190 200 210 220 230 240
pF1KB7 V
:
CCDS47 V
>>CCDS34407.1 C6orf25 gene_id:80739|Hs108|chr6 (222 aa)
initn: 1277 init1: 1277 opt: 1277 Z-score: 1268.1 bits: 241.9 E(32554): 2.6e-64
Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
:
CCDS34 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTGKGMGMGRG
190 200 210 220
>>CCDS34406.1 C6orf25 gene_id:80739|Hs108|chr6 (237 aa)
initn: 1277 init1: 1277 opt: 1277 Z-score: 1267.7 bits: 241.9 E(32554): 2.7e-64
Smith-Waterman score: 1280; 86.7% identity (90.4% similar) in 218 aa overlap (1-209:1-217)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 A---PLVKT------EPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPA
: : .: : .. . .. . :: ::.:
CCDS34 ALSPPHSSTCENRAPEASKGGRAQDSRGPGP-GTEPALCGSGPSSPQQAPPAVHSGPC
190 200 210 220 230
240
pF1KB7 DASTIYAVVV
>>CCDS4716.1 C6orf25 gene_id:80739|Hs108|chr6 (217 aa)
initn: 1377 init1: 965 opt: 965 Z-score: 961.0 bits: 185.1 E(32554): 3.3e-47
Smith-Waterman score: 1305; 84.6% identity (87.1% similar) in 241 aa overlap (1-241:1-217)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
:::::::::::::::::. :. . .: : : : :..
CCDS47 HVLGDRTYCKAPGPTHGAC-PRNRFD----------HSLDL-------LCP------PHI
130 140 150
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
160 170 180 190 200 210
pF1KB7 V
:
CCDS47 V
>>CCDS4717.1 C6orf25 gene_id:80739|Hs108|chr6 (193 aa)
initn: 956 init1: 956 opt: 959 Z-score: 955.8 bits: 183.9 E(32554): 6.5e-47
Smith-Waterman score: 959; 96.5% identity (97.9% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::. :.
CCDS47 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSS
130 140 150 160 170 180
>>CCDS34405.1 C6orf25 gene_id:80739|Hs108|chr6 (197 aa)
initn: 956 init1: 956 opt: 956 Z-score: 952.7 bits: 183.4 E(32554): 9.6e-47
Smith-Waterman score: 1255; 81.7% identity (81.7% similar) in 241 aa overlap (1-241:1-197)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::
CCDS34 HVLGDRTYCKAPGPTH--------------------------------------------
130
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
140 150 160 170 180 190
pF1KB7 V
:
CCDS34 V
241 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:54:39 2016 done: Fri Nov 4 05:54:39 2016
Total Scan time: 2.800 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]