FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7192, 317 aa
  1>>>pF1KB7192 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0824+/-0.000386; mu= -0.5472+/- 0.024
 mean_var=239.7299+/-49.451, 0's: 0 Z-trim(121.0): 8  B-trim: 1815 in 2/56
 Lambda= 0.082835
 statistics sampled from 36919 (36931) to 36919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.433), width:  16
 Scan time:  8.530

The best scores are:                                      opt bits E(85289)
NP_004958 (OMIM: 147563) bone sialoprotein 2 precu ( 317) 2090 262.2 9.8e-70
NP_001030025 (OMIM: 300029,300455,300834,304020,31 (1152)  251 42.9  0.0037


>>NP_004958 (OMIM: 147563) bone sialoprotein 2 precursor  (317 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 1372.9  bits: 262.2 E(85289): 9.8e-70
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB7 MKTALILLSILGMACAFSMKNLHRRVKIEDSEENGVFKYRPRYYLYKHAYFYPHLKRFPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKTALILLSILGMACAFSMKNLHRRVKIEDSEENGVFKYRPRYYLYKHAYFYPHLKRFPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QGSSDSSEENGDDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QGSSDSSEENGDDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GTGYTGLAAIQLPKKAGDITNKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GTGYTGLAAIQLPKKAGDITNKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TNSTEAENGNGSSGGDNGEEGEEESVTGANAEDTTETGRQGKGTSKTTTSPNGGFEPTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TNSTEAENGNGSSGGDNGEEGEEESVTGANAEDTTETGRQGKGTSKTTTSPNGGFEPTTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PQVYRTTSPPFGKTTTVEYEGEYEYTGANEYDNGYEIYESENGEPRGDNYRAYEDEYSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PQVYRTTSPPFGKTTTVEYEGEYEYTGANEYDNGYEIYESENGEPRGDNYRAYEDEYSYF
              250       260       270       280       290       300

              310       
pF1KB7 KGQGYDGYDGQNYYHHQ
       :::::::::::::::::
NP_004 KGQGYDGYDGQNYYHHQ
              310       

>>NP_001030025 (OMIM: 300029,300455,300834,304020,312610  (1152 aa)
 initn: 358 init1: 143 opt: 251  Z-score: 177.6  bits: 42.9 E(85289): 0.0037
Smith-Waterman score: 260; 30.7% identity (55.8% similar) in 251 aa overlap (65-307:737-986)

           40        50        60        70        80        90    
pF1KB7 GVFKYRPRYYLYKHAYFYPHLKRFPVQGSSDSSEENGDDSSEEEEEEEETSNEGENNEES
                                     .. ::.::   ::::.: : ..:::..:  
NP_001 GEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGD-REEEEEKEGEGKEEGEGEEVE
        710       720       730       740        750       760     

          100        110        120       130         140       150
pF1KB7 NEDEDSEAE-NTTLSATTLGYGED-ATPGTGYTGLAAIQLPKK--AGDITNKATKEKESD
       .: :  :.: .    :     ::. .  : :    .  .  .:  .:.. .  ..: ...
NP_001 GEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGE
         770       780       790       800       810       820     

              160       170        180       190        200        
pF1KB7 EEEEEEEEGNENEESEAEVDENE-QGINGTSTNSTEAENGNGSSGGDNGE-EGEEESVTG
       .::::::  .:.::.:.: .:.: .  .: . .  :.:.:.:   :..:: :::::   :
NP_001 REEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEG
         830       840       850       860       870       880     

      210       220       230        240       250       260       
pF1KB7 ANAEDTTETGRQGKGTSKTTTSPNG-GFEPTTPPQVYRTTSPPFGKTTTVEYEGEYEY-T
        . :.    :.. .: ..     .: : :     .  .      :.    : ::: :   
NP_001 EGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGE
         890       900       910       920       930       940     

        270       280       290       300       310                
pF1KB7 GANEYDNGYEIYESENGEPRGDNYRAYEDEYSYFKGQGYDGYDGQNYYHHQ         
       : .: ..:    : :.:: .:..    : : .  .:.  .:                   
NP_001 GEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEG
         950       960       970       980       990      1000     

NP_001 EEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEE
        1010      1020      1030      1040      1050      1060     




317 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:46:57 2016 done: Fri Nov  4 05:46:59 2016
 Total Scan time:  8.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]