FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7192, 317 aa
  1>>>pF1KB7192 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0679+/-0.00101; mu= -0.2379+/- 0.062
 mean_var=230.7974+/-45.319, 0's: 0 Z-trim(112.9): 18  B-trim: 0 in 0/53
 Lambda= 0.084423
 statistics sampled from 13565 (13575) to 13565 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.417), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS3624.1 IBSP gene_id:3381|Hs108|chr4            ( 317) 2090 266.9 1.4e-71


>>CCDS3624.1 IBSP gene_id:3381|Hs108|chr4                 (317 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 1398.3  bits: 266.9 E(32554): 1.4e-71
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB7 MKTALILLSILGMACAFSMKNLHRRVKIEDSEENGVFKYRPRYYLYKHAYFYPHLKRFPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MKTALILLSILGMACAFSMKNLHRRVKIEDSEENGVFKYRPRYYLYKHAYFYPHLKRFPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QGSSDSSEENGDDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 QGSSDSSEENGDDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GTGYTGLAAIQLPKKAGDITNKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GTGYTGLAAIQLPKKAGDITNKATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TNSTEAENGNGSSGGDNGEEGEEESVTGANAEDTTETGRQGKGTSKTTTSPNGGFEPTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TNSTEAENGNGSSGGDNGEEGEEESVTGANAEDTTETGRQGKGTSKTTTSPNGGFEPTTP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PQVYRTTSPPFGKTTTVEYEGEYEYTGANEYDNGYEIYESENGEPRGDNYRAYEDEYSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PQVYRTTSPPFGKTTTVEYEGEYEYTGANEYDNGYEIYESENGEPRGDNYRAYEDEYSYF
              250       260       270       280       290       300

              310       
pF1KB7 KGQGYDGYDGQNYYHHQ
       :::::::::::::::::
CCDS36 KGQGYDGYDGQNYYHHQ
              310       




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:46:57 2016 done: Fri Nov  4 05:46:57 2016
 Total Scan time:  3.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]