FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7189, 131 aa
  1>>>pF1KB7189 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4637+/-0.000514; mu= 18.2476+/- 0.031
 mean_var=85.1081+/-17.154, 0's: 0 Z-trim(117.4): 4  B-trim: 394 in 1/50
 Lambda= 0.139024
 statistics sampled from 18159 (18163) to 18159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.558), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS11421.1 HCRT gene_id:3060|Hs108|chr17          ( 131)  891 186.4 4.2e-48


>>CCDS11421.1 HCRT gene_id:3060|Hs108|chr17               (131 aa)
 initn: 891 init1: 891 opt: 891  Z-score: 977.0  bits: 186.4 E(32554): 4.2e-48
Smith-Waterman score: 891; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB7 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA
               70        80        90       100       110       120

              130 
pF1KB7 ASVAPGGQSGI
       :::::::::::
CCDS11 ASVAPGGQSGI
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:45:03 2016 done: Fri Nov  4 05:45:03 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]