FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7180, 420 aa
  1>>>pF1KB7180 420 - 420 aa - 420 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9968+/-0.000652; mu= 16.5343+/- 0.040
 mean_var=123.8509+/-25.783, 0's: 0 Z-trim(115.6): 117  B-trim: 646 in 1/52
 Lambda= 0.115246
 statistics sampled from 16045 (16179) to 16045 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.497), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(32554)
CCDS4673.1 RNF39 gene_id:80352|Hs108|chr6          ( 420) 2951 501.1 7.9e-142
CCDS4674.1 RNF39 gene_id:80352|Hs108|chr6          ( 354) 2267 387.3 1.2e-107


>>CCDS4673.1 RNF39 gene_id:80352|Hs108|chr6               (420 aa)
 initn: 2951 init1: 2951 opt: 2951  Z-score: 2659.7  bits: 501.1 E(32554): 7.9e-142
Smith-Waterman score: 2951; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KB7 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LLISADRRSVQLAPPGTPAPPDGPKRFDQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLISADRRSVQLAPPGTPAPPDGPKRFDQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEDADDEESHYAVGAAGESVQRKGCVRLCPAGAVWAVEGRGGRLWALTAPEPTLLGGVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GEDADDEESHYAVGAAGESVQRKGCVRLCPAGAVWAVEGRGGRLWALTAPEPTLLGGVEP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PPRRIRVDLDWERGRVAFYDGRSLDLLYAFQAPGPLGERIFPLFCTCDPRAPLRIVPAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PPRRIRVDLDWERGRVAFYDGRSLDLLYAFQAPGPLGERIFPLFCTCDPRAPLRIVPAES
              370       380       390       400       410       420

>>CCDS4674.1 RNF39 gene_id:80352|Hs108|chr6               (354 aa)
 initn: 2467 init1: 2267 opt: 2267  Z-score: 2046.0  bits: 387.3 E(32554): 1.2e-107
Smith-Waterman score: 2339; 84.3% identity (84.3% similar) in 420 aa overlap (1-420:1-354)

               10        20        30        40        50        60
pF1KB7 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MWWRDLTRLRLWLKREAIPGEGRKAAKVNAGVGEKGIYTASSRGGPPSARSKAVTVVAEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AASRSWLSMDAPELGPGLVERLEQLATCPLCGGSFEDPVLLACEHSFCRACLARRWGTPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ATGTEASPTACPCCGLPCPRRSLRSNVRLAVEVRISRELREKLAEPGARAGRRRGGRIPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGCLDLPGEDMRKTWRRFEVPTSKSSNSEDDLPEDYPVVKKMLHRLTADLTLDPGTAHRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LLISADRRSVQLAPPGTPAPPDGPKRFDQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLISADRRSVQLAPPGTPAPPDGPKRFDQLPAVLGAQGFGAGRHCWEVETADAASCRDSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEDADDEESHYAVGAAGESVQRKGCVRLCPAGAVWAVEGRGGRLWALTAPEPTLLGGVEP
       :::::::::::::::::::::::::                                   
CCDS46 GEDADDEESHYAVGAAGESVQRKGC-----------------------------------
              310       320                                        

              370       380       390       400       410       420
pF1KB7 PPRRIRVDLDWERGRVAFYDGRSLDLLYAFQAPGPLGERIFPLFCTCDPRAPLRIVPAES
                                      :::::::::::::::::::::::::::::
CCDS46 -------------------------------APGPLGERIFPLFCTCDPRAPLRIVPAES
                                        330       340       350    




420 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:39:21 2016 done: Fri Nov  4 05:39:22 2016
 Total Scan time:  3.640 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]