FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7173, 530 aa
  1>>>pF1KB7173 530 - 530 aa - 530 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.4729+/-0.00123; mu= -13.9706+/- 0.074
 mean_var=401.7635+/-82.333, 0's: 0 Z-trim(113.9): 16  B-trim: 392 in 1/52
 Lambda= 0.063987
 statistics sampled from 14463 (14477) to 14463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.445), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(32554)
CCDS14183.1 RAI2 gene_id:10742|Hs108|chrX          ( 530) 3538 340.8 2.4e-93
CCDS55374.1 RAI2 gene_id:10742|Hs108|chrX          ( 480) 2922 283.9 2.9e-76


>>CCDS14183.1 RAI2 gene_id:10742|Hs108|chrX               (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1789.4  bits: 340.8 E(32554): 2.4e-93
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>CCDS55374.1 RAI2 gene_id:10742|Hs108|chrX               (480 aa)
 initn: 2922 init1: 2922 opt: 2922  Z-score: 1482.7  bits: 283.9 E(32554): 2.9e-76
Smith-Waterman score: 3105; 90.4% identity (90.6% similar) in 530 aa overlap (1-530:1-480)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS55 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLV--------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
                                           ::::::::::::::::::::::::
CCDS55 ------------------------------------EGSSAPELNPNGNATYVMTTQGPV
                                             50        60        70

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
               80        90       100       110       120       130

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              140       150       160       170       180       190

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              200       210       220       230       240       250

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              260       270       280       290       300       310

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              320       330       340       350       360       370

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              380       390       400       410       420       430

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              440       450       460       470       480




530 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:36:56 2016 done: Fri Nov  4 05:36:56 2016
 Total Scan time:  4.110 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]