FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7084, 127 aa
  1>>>pF1KB7084 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9938+/-0.000622; mu= 11.5394+/- 0.037
 mean_var=50.4253+/-10.085, 0's: 0 Z-trim(109.2): 29  B-trim: 0 in 0/49
 Lambda= 0.180613
 statistics sampled from 10711 (10734) to 10711 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.33), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS1412.1 PHLDA3 gene_id:23612|Hs108|chr1         ( 127)  827 222.6 5.2e-59
CCDS7741.1 PHLDA2 gene_id:7262|Hs108|chr11         ( 152)  368 103.0 6.1e-23


>>CCDS1412.1 PHLDA3 gene_id:23612|Hs108|chr1              (127 aa)
 initn: 827 init1: 827 opt: 827  Z-score: 1172.9  bits: 222.6 E(32554): 5.2e-59
Smith-Waterman score: 827; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB7 MTAAATATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTAAATATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSL
               70        80        90       100       110       120

              
pF1KB7 GTGTLVS
       :::::::
CCDS14 GTGTLVS
              

>>CCDS7741.1 PHLDA2 gene_id:7262|Hs108|chr11              (152 aa)
 initn: 369 init1: 165 opt: 368  Z-score: 525.3  bits: 103.0 E(32554): 6.1e-23
Smith-Waterman score: 368; 55.5% identity (74.5% similar) in 110 aa overlap (9-118:7-114)

               10        20        30        40        50        60
pF1KB7 MTAAATATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKA
               ::.:: ::::: .:.::::.:: :::   :.:: :.  . ::::: :  :  
CCDS77   MKSPDEVLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRA-RPKELRFHSILK
                 10        20        30        40         50       

               70        80        90       100       110       120
pF1KB7 VECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSL
       :.::: ::...:::.::    ::::::  :.  ::: :.:.:. :.:..:.:  :.::  
CCDS77 VDCVERTGKYVYFTIVTTDHKEIDFRCAGES-CWNAAIALALIDFQNRRALQDFRSRQER
        60        70        80         90       100       110      

                                           
pF1KB7 GTGTLVS                             
                                           
CCDS77 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPRTP
        120       130       140       150  




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:53:26 2016 done: Sat Nov  5 00:53:26 2016
 Total Scan time:  1.560 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]