Result of FASTA (ccds) for
pF1KB6987
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6987, 219 aa
1>>>pF1KB6987 219 - 219 aa - 219 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0689+/-0.000875; mu= 2.9724+/- 0.053
mean_var=191.7946+/-40.064, 0's: 0 Z-trim(113.4): 18 B-trim: 188 in 1/53
Lambda= 0.092610
statistics sampled from 14008 (14024) to 14008 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.431), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS34876.1 RBPMS gene_id:11030|Hs108|chr8 ( 219) 1482 209.4 1.4e-54
CCDS34875.1 RBPMS gene_id:11030|Hs108|chr8 ( 204) 1183 169.4 1.5e-42
CCDS6077.1 RBPMS gene_id:11030|Hs108|chr8 ( 196) 1171 167.8 4.3e-42
CCDS32271.1 RBPMS2 gene_id:348093|Hs108|chr15 ( 209) 791 117.1 8.6e-27
>>CCDS34876.1 RBPMS gene_id:11030|Hs108|chr8 (219 aa)
initn: 1482 init1: 1482 opt: 1482 Z-score: 1093.1 bits: 209.4 E(32554): 1.4e-54
Smith-Waterman score: 1482; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
:::::::::::::::::::::::::::::::::::::::
CCDS34 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
190 200 210
>>CCDS34875.1 RBPMS gene_id:11030|Hs108|chr8 (204 aa)
initn: 1171 init1: 1171 opt: 1183 Z-score: 877.6 bits: 169.4 E(32554): 1.5e-42
Smith-Waterman score: 1183; 93.2% identity (95.8% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQ-CFS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: : .
CCDS34 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQLCEG
130 140 150 160 170 180
180 190 200 210
pF1KB6 PEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
.. . :. :
CCDS34 QTVRRSHPLSAPSPDSASLAWFPV
190 200
>>CCDS6077.1 RBPMS gene_id:11030|Hs108|chr8 (196 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 869.2 bits: 167.8 E(32554): 4.3e-42
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWL
130 140 150 160 170 180
190 200 210
pF1KB6 EAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
CCDS60 PPSEATSQGWKSRQFC
190
>>CCDS32271.1 RBPMS2 gene_id:348093|Hs108|chr15 (209 aa)
initn: 846 init1: 782 opt: 791 Z-score: 594.5 bits: 117.1 E(32554): 8.6e-27
Smith-Waterman score: 791; 69.4% identity (82.8% similar) in 180 aa overlap (3-176:10-189)
10 20 30 40 50
pF1KB6 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGS
.::.. . . .. :::::::::::::.::::::::::::::::::::
CCDS32 MSNLKPDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT
:::::..:::::: ::::. :::::::::::::::: :::::::::::::::::.::..:
CCDS32 LIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMAT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 PNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYP---
::::. : .::::.::.: :: :.:::.::::::: .::.::. :::::
CCDS32 PNPSNVHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFTYPTAT
130 140 150 160 170 180
180 190 200 210
pF1KB6 ---ASLHAQCFSPEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC
:.::::
CCDS32 AAAAALHAQVRWYPSSDTTQQGWKYRQFC
190 200
219 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:36:51 2016 done: Sat Nov 5 14:36:51 2016
Total Scan time: 2.430 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]