FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6980, 245 aa
  1>>>pF1KB6980 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6200+/-0.000824; mu= 12.8107+/- 0.049
 mean_var=64.3797+/-12.911, 0's: 0 Z-trim(106.1): 12  B-trim: 0 in 0/50
 Lambda= 0.159845
 statistics sampled from 8788 (8796) to 8788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.27), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS6414.1 EXOSC4 gene_id:54512|Hs108|chr8         ( 245) 1592 375.6 1.6e-104
CCDS10887.1 EXOSC6 gene_id:118460|Hs108|chr16      ( 272)  274 71.7 5.6e-13


>>CCDS6414.1 EXOSC4 gene_id:54512|Hs108|chr8              (245 aa)
 initn: 1592 init1: 1592 opt: 1592  Z-score: 1989.8  bits: 375.6 E(32554): 1.6e-104
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB6 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS
              190       200       210       220       230       240

            
pF1KB6 ILLGD
       :::::
CCDS64 ILLGD
            

>>CCDS10887.1 EXOSC6 gene_id:118460|Hs108|chr16           (272 aa)
 initn: 256 init1: 136 opt: 274  Z-score: 346.5  bits: 71.7 E(32554): 5.6e-13
Smith-Waterman score: 359; 34.2% identity (65.8% similar) in 196 aa overlap (17-199:31-225)

                             10        20        30        40      
pF1KB6               MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNT
                                     :   .:: . :: :...:: ::::.: :.:
CCDS10 MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT
               10        20        30        40        50        60

         50        60                  70        80        90      
pF1KB6 KALAVVYGPHEIRGSRARALPD----------RALVNCQYSSATFSTGERKRRPHGDRKS
       :.: .: ::.. .:..  . :           :. . :..  : :. :.:.: : :  . 
CCDS10 KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFA-GRRRRAPPGGCEE
               70        80        90       100        110         

        100       110       120       130       140       150      
pF1KB6 CEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF
        :..: :....: :.    .::.:... . .:.  :.. :: ..::.::. :::. : :.
CCDS10 RELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDL
     120       130       140       150       160       170         

        160          170       180       190       200       210   
pF1KB6 VCACSAGFVDGTA---LADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERV
       : .:. ... : :   : : ...::  ..  :..::.:. .:.: :              
CCDS10 VVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAE
     180       190       200       210       220       230         

           220       230       240      
pF1KB6 LEAAAQAARDVHTLLDRVVRQHVREASILLGD 
                                        
CCDS10 AVRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP
     240       250       260       270  




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:47:50 2016 done: Fri Nov  4 10:47:51 2016
 Total Scan time:  1.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]