Result of FASTA (ccds) for
pF1KB6977
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6977, 217 aa
1>>>pF1KB6977 217 - 217 aa - 217 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4595+/-0.000769; mu= 12.9240+/- 0.046
mean_var=64.5087+/-12.852, 0's: 0 Z-trim(108.2): 23 B-trim: 278 in 1/52
Lambda= 0.159685
statistics sampled from 10141 (10164) to 10141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.304), width: 16
Scan time: 1.000
The best scores are: opt bits E(33420)
CCDS11653.1 GH1 gene_id:2688|Hs109|chr17 ( 217) 1439 339.8 7.8e-94
CCDS11647.1 GH2 gene_id:2689|Hs109|chr17 ( 217) 1321 312.7 1.2e-85
CCDS42369.1 CSH2 gene_id:1443|Hs109|chr17 ( 217) 1229 291.5 2.9e-79
CCDS11649.1 CSH1 gene_id:1442|Hs109|chr17 ( 217) 1228 291.2 3.4e-79
CCDS11652.1 CSHL1 gene_id:1444|Hs109|chr17 ( 222) 1120 266.4 1.1e-71
CCDS45760.1 GH1 gene_id:2688|Hs109|chr17 ( 202) 958 229.0 1.7e-60
CCDS11648.1 GH2 gene_id:2689|Hs109|chr17 ( 256) 904 216.6 1.1e-56
CCDS45757.1 GH2 gene_id:2689|Hs109|chr17 ( 245) 895 214.5 4.6e-56
CCDS45758.1 GH2 gene_id:2689|Hs109|chr17 ( 202) 892 213.8 6.3e-56
CCDS11646.1 CSH2 gene_id:1443|Hs109|chr17 ( 167) 818 196.7 7.3e-51
CCDS11654.1 GH1 gene_id:2688|Hs109|chr17 ( 177) 802 193.1 9.8e-50
CCDS45759.1 CSHL1 gene_id:1444|Hs109|chr17 ( 139) 724 175.0 2e-44
CCDS82189.1 CSHL1 gene_id:1444|Hs109|chr17 ( 160) 724 175.1 2.3e-44
CCDS42370.1 CSHL1 gene_id:1444|Hs109|chr17 ( 128) 687 166.5 7e-42
CCDS42368.1 CSH2 gene_id:1443|Hs109|chr17 ( 122) 421 105.2 1.9e-23
CCDS4548.1 PRL gene_id:5617|Hs109|chr6 ( 227) 270 70.5 9.6e-13
>>CCDS11653.1 GH1 gene_id:2688|Hs109|chr17 (217 aa)
initn: 1439 init1: 1439 opt: 1439 Z-score: 1798.3 bits: 339.8 E(33420): 7.8e-94
Smith-Waterman score: 1439; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS11647.1 GH2 gene_id:2689|Hs109|chr17 (217 aa)
initn: 1321 init1: 1321 opt: 1321 Z-score: 1651.3 bits: 312.7 E(33420): 1.2e-85
Smith-Waterman score: 1321; 93.1% identity (97.2% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.:::::::::
CCDS11 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
:: ::::::::::::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS11 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
::::::::::::::::: :::::::::::: :::::::::::::.:.::::::.:::::
CCDS11 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS42369.1 CSH2 gene_id:1443|Hs109|chr17 (217 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1536.8 bits: 291.5 E(33420): 2.9e-79
Smith-Waterman score: 1229; 85.3% identity (95.4% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::.:::::::::..: :.:::::::.:::.::: ::::.::::::::.
CCDS42 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
::::.::::::.. :::.:::.::::::: :::::::::::::::::::.::::::.:::
CCDS42 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
:.:::.::: .:::. : :::::::::::::::::::: :::::.::::::::::::: :
CCDS42 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS42 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS11649.1 CSH1 gene_id:1442|Hs109|chr17 (217 aa)
initn: 1228 init1: 1228 opt: 1228 Z-score: 1535.6 bits: 291.2 E(33420): 3.4e-79
Smith-Waterman score: 1228; 85.3% identity (94.9% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
:: ::::::::::.:::::::::..: :.:::::::.:::.::: ::::.::::::::.
CCDS11 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
::::.::::::.. :::.:::.::::::: :::::::::::::::::::.::::::.:::
CCDS11 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
:.:::.::: .:::. : :::::::::::::::::::: :::::.::::::::::::: :
CCDS11 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS11652.1 CSHL1 gene_id:1444|Hs109|chr17 (222 aa)
initn: 1128 init1: 843 opt: 1120 Z-score: 1400.9 bits: 266.4 E(33420): 1.1e-71
Smith-Waterman score: 1120; 79.3% identity (89.6% similar) in 222 aa overlap (1-217:1-222)
10 20 30 40 50
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEF---
::.::::::::::.:::::::::..: :.:::::: .:::.::: ::::.::::::
CCDS11 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFKEAMLQAHRAHQLAIDTYQEFISS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 --EEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEP
:::: ::::::::.. :::.:::.:::: :: ::::::::::::.::::::.: :::
CCDS11 WGMEAYITKEQKYSFLHDSQTSFCFSDSIPTSSNMEETQQKSNLELLHISLLLIESRLEP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTN
:.::::.:.:.::: .:::. : :::::::::: ::::::::: ::: .::::::::::
CCDS11 VRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTN
130 140 150 160 170 180
180 190 200 210
pF1KB6 SHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::: ::::::::::.::::::::::::::.::::::::::::
CCDS11 SHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210 220
>>CCDS45760.1 GH1 gene_id:2688|Hs109|chr17 (202 aa)
initn: 1327 init1: 958 opt: 958 Z-score: 1199.9 bits: 229.0 E(33420): 1.7e-60
Smith-Waterman score: 1301; 93.1% identity (93.1% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ------------NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
110 120 130 140 150 160
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
>>CCDS11648.1 GH2 gene_id:2689|Hs109|chr17 (256 aa)
initn: 892 init1: 892 opt: 904 Z-score: 1131.0 bits: 216.6 E(33420): 1.1e-56
Smith-Waterman score: 904; 88.3% identity (92.6% similar) in 163 aa overlap (1-162:1-163)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.:::::::::
CCDS11 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
:: ::::::::::::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS11 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMG-RLEDGSPRTGQIFKQTYSKFDTNSHND
::::::::::::::::: :::::::::::: :. : : :
CCDS11 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWVRVAPGIPNPGAPLASRDWGEKHCCPLF
130 140 150 160 170 180
180 190 200 210
pF1KB6 DALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
CCDS11 SSQALTQENSPYSSFPLVNPPGLSLQPGGEGGKWMNERGREQCPSAWPLLLFLHFAEAGR
190 200 210 220 230 240
>>CCDS45757.1 GH2 gene_id:2689|Hs109|chr17 (245 aa)
initn: 931 init1: 895 opt: 895 Z-score: 1120.1 bits: 214.5 E(33420): 4.6e-56
Smith-Waterman score: 895; 92.1% identity (96.7% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.:::::::::
CCDS45 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
:: ::::::::::::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS45 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
::::::::::::::::: :::::::::::.:
CCDS45 SVFANSLVYGASDSNVYRHLKDLEEGIQTLIGWKMAAPGLGRSSISPTASLTQNRTTMTH
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
CCDS45 CSRTTGCSTASGRTWTRSRHSCASCSAALWRAAVASSCPGGIPVTPPQCLSWSWKVLLQC
190 200 210 220 230 240
>>CCDS45758.1 GH2 gene_id:2689|Hs109|chr17 (202 aa)
initn: 1223 init1: 892 opt: 892 Z-score: 1117.7 bits: 213.8 E(33420): 6.3e-56
Smith-Waterman score: 1197; 86.6% identity (90.8% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.::::::
CCDS45 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
:::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS45 ------------NPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
::::::::::::::::: :::::::::::: :::::::::::::.:.::::::.:::::
CCDS45 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
110 120 130 140 150 160
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
>>CCDS11646.1 CSH2 gene_id:1443|Hs109|chr17 (167 aa)
initn: 813 init1: 813 opt: 818 Z-score: 1026.9 bits: 196.7 E(33420): 7.3e-51
Smith-Waterman score: 818; 77.9% identity (90.8% similar) in 163 aa overlap (1-162:1-163)
10 20 30 40 50 60
pF1KB6 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
::.::::::::::.:::::::::..: :.:::::::.:::.::: ::::.::::::::.
CCDS11 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
::::.::::::.. :::.:::.::::::: :::::::::::::::::::.::::::.:::
CCDS11 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMG-RLEDGSPRTGQIFKQTYSKFDTNSHND
:.:::.::: .:::. : :::::::::::::: :. : :
CCDS11 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGVRVAPGVANPGTPLA
130 140 150 160
180 190 200 210
pF1KB6 DALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
217 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jul 3 20:36:07 2020 done: Fri Jul 3 20:36:08 2020
Total Scan time: 1.000 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]