FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6974, 243 aa
  1>>>pF1KB6974 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0229+/-0.000863; mu= 7.9725+/- 0.052
 mean_var=122.1993+/-24.064, 0's: 0 Z-trim(110.6): 17  B-trim: 120 in 1/50
 Lambda= 0.116022
 statistics sampled from 11753 (11764) to 11753 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.361), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS34520.1 RWDD1 gene_id:51389|Hs108|chr6         ( 243) 1554 270.5 7.3e-73
CCDS43496.1 RWDD1 gene_id:51389|Hs108|chr6         ( 147)  949 169.1 1.5e-42


>>CCDS34520.1 RWDD1 gene_id:51389|Hs108|chr6              (243 aa)
 initn: 1554 init1: 1554 opt: 1554  Z-score: 1421.6  bits: 270.5 E(32554): 7.3e-73
Smith-Waterman score: 1554; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB6 MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESD
              190       200       210       220       230       240

          
pF1KB6 SAD
       :::
CCDS34 SAD
          

>>CCDS43496.1 RWDD1 gene_id:51389|Hs108|chr6              (147 aa)
 initn: 949 init1: 949 opt: 949  Z-score: 877.5  bits: 169.1 E(32554): 1.5e-42
Smith-Waterman score: 949; 100.0% identity (100.0% similar) in 147 aa overlap (97-243:1-147)

         70        80        90       100       110       120      
pF1KB6 YEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEK
                                     ::::::::::::::::::::::::::::::
CCDS43                               MVMIFTLVTAVQEKLNEIVDQIKTRREEEK
                                             10        20        30

        130       140       150       160       170       180      
pF1KB6 KQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQL
               40        50        60        70        80        90

        190       200       210       220       230       240   
pF1KB6 FETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD
              100       110       120       130       140       




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:35:48 2016 done: Sat Nov  5 14:35:49 2016
 Total Scan time:  2.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]