Result of FASTA (ccds) for
pF1KB6968
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6968, 241 aa
1>>>pF1KB6968 241 - 241 aa - 241 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4454+/-0.000869; mu= 6.8266+/- 0.053
mean_var=190.0039+/-37.440, 0's: 0 Z-trim(113.5): 29 B-trim: 134 in 2/50
Lambda= 0.093045
statistics sampled from 14072 (14095) to 14072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.433), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS341.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 241) 1614 228.1 4e-60
CCDS60061.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 233) 1467 208.4 3.4e-54
CCDS72741.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 263) 1467 208.4 3.7e-54
CCDS72744.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 179) 1114 160.9 5.2e-40
CCDS72742.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 146) 947 138.4 2.5e-33
CCDS60062.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 243) 833 123.3 1.5e-28
CCDS72743.1 ZCCHC17 gene_id:51538|Hs108|chr1 ( 160) 584 89.7 1.3e-18
>>CCDS341.1 ZCCHC17 gene_id:51538|Hs108|chr1 (241 aa)
initn: 1614 init1: 1614 opt: 1614 Z-score: 1192.9 bits: 228.1 E(32554): 4e-60
Smith-Waterman score: 1614; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK
190 200 210 220 230 240
pF1KB6 E
:
CCDS34 E
>>CCDS60061.1 ZCCHC17 gene_id:51538|Hs108|chr1 (233 aa)
initn: 1467 init1: 1467 opt: 1467 Z-score: 1086.4 bits: 208.4 E(32554): 3.4e-54
Smith-Waterman score: 1467; 100.0% identity (100.0% similar) in 219 aa overlap (23-241:15-233)
10 20 30 40 50 60
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
::::::::::::::::::::::::::::::::::::::
CCDS60 MKQLIEDTEKNKVYVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK
180 190 200 210 220 230
pF1KB6 E
:
CCDS60 E
>>CCDS72741.1 ZCCHC17 gene_id:51538|Hs108|chr1 (263 aa)
initn: 1467 init1: 1467 opt: 1467 Z-score: 1085.7 bits: 208.4 E(32554): 3.7e-54
Smith-Waterman score: 1467; 100.0% identity (100.0% similar) in 219 aa overlap (23-241:45-263)
10 20 30 40 50
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSC
::::::::::::::::::::::::::::::
CCDS72 TPRLCSLNLPFSAEGADSKGWEAGPESPAVVAMVTDYGAFIKIPGCRKQGLVHRTHMSSC
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 RVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRR
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 RSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAE
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 FEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKK
200 210 220 230 240 250
240
pF1KB6 KKHKKKHKE
:::::::::
CCDS72 KKHKKKHKE
260
>>CCDS72744.1 ZCCHC17 gene_id:51538|Hs108|chr1 (179 aa)
initn: 1114 init1: 1114 opt: 1114 Z-score: 831.7 bits: 160.9 E(32554): 5.2e-40
Smith-Waterman score: 1114; 98.2% identity (99.4% similar) in 170 aa overlap (72-241:10-179)
50 60 70 80 90 100
pF1KB6 GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPN
.: .::::::::::::::::::::::::::
CCDS72 MGPLSKSQAVGSKMKNDRIKVSLSMKVVNQGTGKDLDPN
10 20 30
110 120 130 140 150 160
pF1KB6 NVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDE
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB6 EEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSK
100 110 120 130 140 150
230 240
pF1KB6 DSKAAKKKKKKKKHKKKHKE
::::::::::::::::::::
CCDS72 DSKAAKKKKKKKKHKKKHKE
160 170
>>CCDS72742.1 ZCCHC17 gene_id:51538|Hs108|chr1 (146 aa)
initn: 973 init1: 947 opt: 947 Z-score: 711.7 bits: 138.4 E(32554): 2.5e-33
Smith-Waterman score: 947; 97.2% identity (98.6% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
::::::::::::::::::::. :.
CCDS72 QKITLEAVLNTTCKKCGCKGEEEKET
130 140
>>CCDS60062.1 ZCCHC17 gene_id:51538|Hs108|chr1 (243 aa)
initn: 1574 init1: 786 opt: 833 Z-score: 626.2 bits: 123.3 E(32554): 1.5e-28
Smith-Waterman score: 1395; 89.3% identity (89.3% similar) in 243 aa overlap (25-241:1-243)
10 20 30 40 50 60
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
::::::::::::::::::::::::::::::::::::
CCDS60 MVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
10 20 30
70 80 90 100 110 120
pF1KB6 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
40 50 60 70 80 90
130 140 150
pF1KB6 QKITLEAVLNTTCKKCGCKG--------------------------HFAKDCFMQPGGTK
:::::::::::::::::::: ::::::::::::::
CCDS60 QKITLEAVLNTTCKKCGCKGRVKPLPFPRFSPCGWTLFWKKEAAQCHFAKDCFMQPGGTK
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB6 YSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGK
160 170 180 190 200 210
220 230 240
pF1KB6 RARHTSKDSKAAKKKKKKKKHKKKHKE
:::::::::::::::::::::::::::
CCDS60 RARHTSKDSKAAKKKKKKKKHKKKHKE
220 230 240
>>CCDS72743.1 ZCCHC17 gene_id:51538|Hs108|chr1 (160 aa)
initn: 593 init1: 572 opt: 584 Z-score: 447.8 bits: 89.7 E(32554): 1.3e-18
Smith-Waterman score: 584; 86.7% identity (94.3% similar) in 105 aa overlap (23-127:15-115)
10 20 30 40 50 60
pF1KB6 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
::::::::::::::::::::::::::::::::::::::
CCDS72 MKQLIEDTEKNKVYVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
::::::::::::::::::::::::::::::::::::::::::::::. ::.:... :
CCDS72 VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIER--RRKRNIE--IG
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
...:: :
CCDS72 SHLTLTAQTLRVIQARGQGTHQKTARQQRRRKRRRSTRRSTRSESIKSVGGG
110 120 130 140 150 160
241 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:45:47 2016 done: Sat Nov 5 17:45:48 2016
Total Scan time: 2.460 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]