FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6965, 173 aa
  1>>>pF1KB6965 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6091+/-0.000971; mu= 16.4766+/- 0.058
 mean_var=69.1474+/-14.566, 0's: 0 Z-trim(104.4): 39  B-trim: 0 in 0/48
 Lambda= 0.154236
 statistics sampled from 7877 (7903) to 7877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.270

The best scores are:                                      opt bits E(32554)
CCDS59415.1 LIM2 gene_id:3982|Hs108|chr19          ( 173) 1205 276.9 4.2e-75
CCDS12831.1 LIM2 gene_id:3982|Hs108|chr19          ( 215)  782 182.9 1.1e-46


>>CCDS59415.1 LIM2 gene_id:3982|Hs108|chr19               (173 aa)
 initn: 1205 init1: 1205 opt: 1205  Z-score: 1461.8  bits: 276.9 E(32554): 4.2e-75
Smith-Waterman score: 1205; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KB6 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WNATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WNATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYT
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KB6 GVTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GVTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
              130       140       150       160       170   

>>CCDS12831.1 LIM2 gene_id:3982|Hs108|chr19               (215 aa)
 initn: 1191 init1: 782 opt: 782  Z-score: 951.9  bits: 182.9 E(32554): 1.1e-46
Smith-Waterman score: 1039; 79.5% identity (79.5% similar) in 205 aa overlap (11-173:11-215)

               10        20        30        40        50          
pF1KB6 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSI--
                 ::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS12 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGE
               10        20        30        40        50        60

                                               60        70        
pF1KB6 ----------------------------------------AYWNATRAFMILSALCAISG
                                               ::::::::::::::::::::
CCDS12 PPGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISG
               70        80        90       100       110       120

       80        90       100       110       120       130        
pF1KB6 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW
              130       140       150       160       170       180

      140       150       160       170   
pF1KB6 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
       :::::::::::::::::::::::::::::::::::
CCDS12 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
              190       200       210     




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:12:44 2016 done: Fri Nov  4 11:12:45 2016
 Total Scan time:  1.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]