Result of FASTA (ccds) for
pF1KB6940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6940, 229 aa
1>>>pF1KB6940 229 - 229 aa - 229 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0697+/-0.000767; mu= 15.1352+/- 0.046
mean_var=58.7159+/-11.864, 0's: 0 Z-trim(107.5): 16 B-trim: 0 in 0/50
Lambda= 0.167377
statistics sampled from 9608 (9613) to 9608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.295), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 229) 1549 382.0 1.7e-106
CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19 ( 231) 1040 259.1 1.7e-69
CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 202) 940 234.9 2.9e-62
CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 155) 934 233.4 6.3e-62
CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11 ( 132) 906 226.6 5.9e-60
>>CCDS8380.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (229 aa)
initn: 1549 init1: 1549 opt: 1549 Z-score: 2025.3 bits: 382.0 E(32554): 1.7e-106
Smith-Waterman score: 1549; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB6 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
130 140 150 160 170 180
190 200 210 220
pF1KB6 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA
190 200 210 220
>>CCDS12602.1 PAFAH1B3 gene_id:5050|Hs108|chr19 (231 aa)
initn: 1047 init1: 1031 opt: 1040 Z-score: 1361.0 bits: 259.1 E(32554): 1.7e-69
Smith-Waterman score: 1040; 65.3% identity (88.0% similar) in 216 aa overlap (4-219:3-218)
10 20 30 40 50 60
pF1KB6 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
:. :::. : ..:.::: :::: :.::: : :::::.:.:.:::.::::.: ::::
CCDS12 MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWR
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
:::::::::::::::: :.::::::.:::::.:.::..::::::::: .:::.:.:::.:
CCDS12 ELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
::::.: :::::...::::::::..:::::.:: .::.:....: ...::.: :::
CCDS12 IVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFV
120 130 140 150 160 170
190 200 210 220
pF1KB6 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA
::::.:: :::.:.:::. ::. .:. :: :...:: .
CCDS12 HSDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
180 190 200 210 220 230
>>CCDS53714.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (202 aa)
initn: 940 init1: 940 opt: 940 Z-score: 1231.4 bits: 234.9 E(32554): 2.9e-62
Smith-Waterman score: 940; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB6 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
::::::::::::::::::
CCDS53 IVQLINTRQPQAKIIVLGKAAASKYSISEIVRLEQGSVNWSIGTYPDDTPATTRPAILQL
130 140 150 160 170 180
>>CCDS53715.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (155 aa)
initn: 932 init1: 932 opt: 934 Z-score: 1225.3 bits: 233.4 E(32554): 6.3e-62
Smith-Waterman score: 934; 92.1% identity (94.7% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KB6 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
::::::::::::::::: . . :. :.
CCDS53 IVQLINTRQPQAKIIVLIIYWQDEQDYHERKVQMD
130 140 150
190 200 210 220
pF1KB6 HSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQTTIA
>>CCDS53713.1 PAFAH1B2 gene_id:5049|Hs108|chr11 (132 aa)
initn: 906 init1: 906 opt: 906 Z-score: 1189.8 bits: 226.6 E(32554): 5.9e-60
Smith-Waterman score: 906; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB6 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 IVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV
::::::::::::
CCDS53 IVQLINTRQPQA
130
229 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:45:16 2016 done: Sat Nov 5 17:45:17 2016
Total Scan time: 2.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]