Result of FASTA (omim) for
pF1KB6936
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6936, 229 aa
1>>>pF1KB6936 229 - 229 aa - 229 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5719+/-0.000304; mu= 8.4872+/- 0.019
mean_var=115.6909+/-23.588, 0's: 0 Z-trim(121.0): 76 B-trim: 1085 in 4/54
Lambda= 0.119241
statistics sampled from 36885 (37063) to 36885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.435), width: 16
Scan time: 7.090
The best scores are: opt bits E(85289)
XP_011525921 (OMIM: 605816) PREDICTED: interleukin ( 229) 1605 286.2 3.1e-77
NP_005746 (OMIM: 605816) interleukin-27 subunit be ( 229) 1605 286.2 3.1e-77
NP_001833 (OMIM: 118946) ciliary neurotrophic fact ( 372) 366 73.2 6.6e-13
XP_016869752 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13
XP_016869753 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13
XP_016869754 (OMIM: 118946) PREDICTED: ciliary neu ( 372) 366 73.2 6.6e-13
NP_671693 (OMIM: 118946) ciliary neurotrophic fact ( 372) 366 73.2 6.6e-13
NP_001193940 (OMIM: 118946) ciliary neurotrophic f ( 372) 366 73.2 6.6e-13
XP_016869751 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13
XP_016869750 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13
XP_016869749 (OMIM: 118946) PREDICTED: ciliary neu ( 439) 366 73.3 7.5e-13
NP_001136256 (OMIM: 600939,614188) interleukin-11 ( 422) 356 71.5 2.4e-12
XP_011526726 (OMIM: 272430,604237) PREDICTED: cyto ( 404) 213 46.9 5.9e-05
NP_001193795 (OMIM: 147880,614689,614752) interleu ( 352) 212 46.7 6e-05
XP_011526725 (OMIM: 272430,604237) PREDICTED: cyto ( 419) 213 46.9 6.1e-05
NP_004741 (OMIM: 272430,604237) cytokine receptor- ( 422) 213 46.9 6.1e-05
XP_011526724 (OMIM: 272430,604237) PREDICTED: cyto ( 423) 213 46.9 6.1e-05
NP_852004 (OMIM: 147880,614689,614752) interleukin ( 365) 212 46.7 6.1e-05
XP_006711362 (OMIM: 147880,614689,614752) PREDICTE ( 381) 212 46.7 6.3e-05
NP_000556 (OMIM: 147880,614689,614752) interleukin ( 468) 212 46.8 7.4e-05
XP_006711361 (OMIM: 147880,614689,614752) PREDICTE ( 484) 212 46.8 7.6e-05
XP_016856689 (OMIM: 147880,614689,614752) PREDICTE ( 501) 212 46.8 7.9e-05
XP_016856688 (OMIM: 147880,614689,614752) PREDICTE ( 517) 212 46.8 8e-05
NP_001191247 (OMIM: 176761,615554,615555) prolacti ( 268) 204 45.3 0.00012
NP_001191246 (OMIM: 176761,615554,615555) prolacti ( 288) 204 45.3 0.00013
XP_016865135 (OMIM: 176761,615554,615555) PREDICTE ( 309) 204 45.3 0.00014
NP_001191244 (OMIM: 176761,615554,615555) prolacti ( 349) 204 45.3 0.00015
NP_001191245 (OMIM: 176761,615554,615555) prolacti ( 376) 204 45.4 0.00016
XP_006714547 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024
XP_011512371 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024
NP_000940 (OMIM: 176761,615554,615555) prolactin r ( 622) 204 45.5 0.00024
XP_011512370 (OMIM: 176761,615554,615555) PREDICTE ( 622) 204 45.5 0.00024
NP_001185618 (OMIM: 601007,614963) leptin receptor ( 896) 195 44.1 0.00094
NP_001003679 (OMIM: 601007,614963) leptin receptor ( 896) 195 44.1 0.00094
NP_001185617 (OMIM: 601007,614963) leptin receptor ( 906) 195 44.1 0.00095
NP_002178 (OMIM: 161561,614890) interleukin-12 sub ( 328) 188 42.6 0.00099
NP_001003680 (OMIM: 601007,614963) leptin receptor ( 958) 195 44.1 0.00099
NP_001185616 (OMIM: 601007,614963) leptin receptor ( 958) 195 44.1 0.00099
NP_002294 (OMIM: 601007,614963) leptin receptor is (1165) 195 44.2 0.0012
NP_004637 (OMIM: 256300,602716) nephrin precursor (1241) 193 43.8 0.0015
XP_016865134 (OMIM: 176761,615554,615555) PREDICTE ( 551) 179 41.2 0.0043
XP_005245197 (OMIM: 147880,614689,614752) PREDICTE ( 338) 175 40.3 0.0048
XP_005245196 (OMIM: 147880,614689,614752) PREDICTE ( 360) 175 40.4 0.005
XP_016856690 (OMIM: 147880,614689,614752) PREDICTE ( 371) 175 40.4 0.0051
>>XP_011525921 (OMIM: 605816) PREDICTED: interleukin-27 (229 aa)
initn: 1605 init1: 1605 opt: 1605 Z-score: 1507.6 bits: 286.2 E(85289): 3.1e-77
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
130 140 150 160 170 180
190 200 210 220
pF1KB6 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
190 200 210 220
>>NP_005746 (OMIM: 605816) interleukin-27 subunit beta p (229 aa)
initn: 1605 init1: 1605 opt: 1605 Z-score: 1507.6 bits: 286.2 E(85289): 3.1e-77
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
130 140 150 160 170 180
190 200 210 220
pF1KB6 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
190 200 210 220
>>NP_001833 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
NP_001 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
NP_001 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
NP_001 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
NP_001 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
NP_001 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>XP_016869752 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>XP_016869753 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>XP_016869754 (OMIM: 118946) PREDICTED: ciliary neurotr (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>NP_671693 (OMIM: 118946) ciliary neurotrophic factor r (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
NP_671 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
NP_671 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
NP_671 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
NP_671 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
NP_671 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>NP_001193940 (OMIM: 118946) ciliary neurotrophic facto (372 aa)
initn: 296 init1: 103 opt: 366 Z-score: 352.7 bits: 73.2 E(85289): 6.6e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
NP_001 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
NP_001 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
140 150 160 170 180
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
NP_001 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
190 200 210 220 230 240
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
NP_001 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
250 260 270 280 290 300
NP_001 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
310 320 330 340 350 360
>>XP_016869751 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 296 init1: 103 opt: 366 Z-score: 351.7 bits: 73.3 E(85289): 7.5e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:175-367)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
150 160 170 180 190
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
200 210 220 230 240 250
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
260 270 280 290 300 310
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
320 330 340 350 360 370
XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
380 390 400 410 420 430
>>XP_016869750 (OMIM: 118946) PREDICTED: ciliary neurotr (439 aa)
initn: 296 init1: 103 opt: 366 Z-score: 351.7 bits: 73.3 E(85289): 7.5e-13
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:175-367)
10 20 30 40 50
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
:: : ..::.. :: . ::: ::
XP_016 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
150 160 170 180 190
60 70 80 90 100 110
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
.:. . :. . . .. : .. .. : : ..::: : ..... . :
XP_016 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
200 210 220 230 240 250
120 130 140 150 160 170
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
... . : :.::::::.: : : :.:.: :. :..:: :: : ::...::.
XP_016 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
260 270 280 290 300 310
180 190 200 210 220
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
....: ..:. . . .: .::::.: .. : ::::. : ::
XP_016 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
320 330 340 350 360 370
XP_016 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
380 390 400 410 420 430
229 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:27:40 2016 done: Sat Nov 5 14:27:41 2016
Total Scan time: 7.090 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]