FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6936, 229 aa
  1>>>pF1KB6936 229 - 229 aa - 229 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7710+/-0.000653; mu= 13.1091+/- 0.040
 mean_var=98.5521+/-18.956, 0's: 0 Z-trim(113.9): 57  B-trim: 3 in 1/51
 Lambda= 0.129194
 statistics sampled from 14429 (14490) to 14429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.445), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS12123.1 EBI3 gene_id:10148|Hs108|chr19         ( 229) 1605 308.5 2.2e-84
CCDS6558.1 CNTFR gene_id:1271|Hs108|chr9           ( 372)  366 77.8 1.1e-14
CCDS6567.1 IL11RA gene_id:3590|Hs108|chr9          ( 422)  356 76.0 4.3e-14


>>CCDS12123.1 EBI3 gene_id:10148|Hs108|chr19              (229 aa)
 initn: 1605 init1: 1605 opt: 1605  Z-score: 1628.3  bits: 308.5 E(32554): 2.2e-84
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB6 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPAPNSTSPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWGSSSSFVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FITEHIIKPDPPEGVRLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKRQGAARFHRV
              130       140       150       160       170       180

              190       200       210       220         
pF1KB6 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK
              190       200       210       220         

>>CCDS6558.1 CNTFR gene_id:1271|Hs108|chr9                (372 aa)
 initn: 296 init1: 103 opt: 366  Z-score: 377.4  bits: 77.8 E(32554): 1.1e-14
Smith-Waterman score: 366; 31.0% identity (58.1% similar) in 203 aa overlap (24-224:108-300)

                      10        20        30        40        50   
pF1KB6        MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
                                     ::     : ..::.. :: .  ::: ::  
CCDS65 GLELGHSGLYACFHRDSWHLRHQVLLHVGLPPRE---PVLSCRSNTYPKGFYCSWHLP--
        80        90       100       110          120       130    

            60        70        80        90       100       110   
pF1KB6 PNSTSPVSFIATYRLGMAARGHSWPCLQQTPTSTSCTITDVQLFSMAPYVLNVTAVHPWG
           .:. .  :. . .   ..   : ..   .. : :  ..:::   : ..... .  :
CCDS65 ----TPTYIPNTFNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALG
                140       150       160       170       180        

           120       130         140       150       160       170 
pF1KB6 SSSSFVPFITEHIIKPDPPEGV--RLSPLAERQLQVQWEPPGSWPFPEIFSLKYWIRYKR
        ... . :    :.::::::.:  :  :   :.:.: :. :..:: :: : ::...::. 
CCDS65 HNATAITFDEFTIVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRP
      190       200       210       220       230       240        

             180       190       200       210       220           
pF1KB6 QGAARFHRVGPIEATSFILRAVRPRARYYVQVAAQDLTDYGELSDWSLPATATMSLGK  
           ....:   ..:.  .  .    .: .::::.: .. :  ::::. : ::       
CCDS65 LILDQWQHVELSDGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATPWTEEPR
      250       260       270       280        290       300       

CCDS65 HLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPFLVSVPITLALAAAAATA
       310       320       330       340       350       360       

>>CCDS6567.1 IL11RA gene_id:3590|Hs108|chr9               (422 aa)
 initn: 145 init1: 109 opt: 356  Z-score: 366.6  bits: 76.0 E(32554): 4.3e-14
Smith-Waterman score: 356; 32.6% identity (56.9% similar) in 218 aa overlap (24-228:112-318)

                      10        20        30        40        50   
pF1KB6        MTPQLLLALVLWASCPPCSGRKGPPAALTLPRVQCRASRYPIAVDCSWTLPPA
                                     :::    : :.:.:. :    .:.:.  :.
CCDS65 AQADSTDEGTYICQTLDGALGGTVTLQLGYPPAR---PVVSCQAADYE-NFSCTWS--PS
              90       100       110          120        130       

            60            70             80        90       100    
pF1KB6 PNSTSPVSFIATYR----LGMAARGHS-----WPCLQQTPTSTSCTITDVQLFSMAPYVL
         :  :. ....::    ::  .. .:     ::: :.   .. :..  ....:.  : .
CCDS65 QISGLPTRYLTSYRKKTVLGADSQRRSPSTGPWPCPQDPLGAARCVVHGAEFWSQ--YRI
         140       150       160       170       180       190     

          110       120       130         140       150       160  
pF1KB6 NVTAVHPWGSSSSFVPFITEHIIKPDPPEGVRLS--PLAERQLQVQWEPPGSWPFPEIFS
       ::: :.: :.:. ..    . :..::::.:.:.   :   :.:...:  :.:::    : 
CCDS65 NVTEVNPLGASTRLLDVSLQSILRPDPPQGLRVESVPGYPRRLRASWTYPASWPCQPHFL
           200       210       220       230       240       250   

            170       180       190         200       210       220
pF1KB6 LKYWIRYKRQGAARFHRVGPIEATSFILRAVR--PRARYYVQVAAQDLTDYGELSDWSLP
       ::. ..:.      .  : :      :  ::   :.:   :.:.:.:. : :  : ::  
CCDS65 LKFRLQYRPAQHPAWSTVEPAGLEEVITDAVAGLPHA---VRVSARDFLDAGTWSTWSPE
           260       270       280       290          300       310

                                                                   
pF1KB6 ATATMSLGK                                                   
       : .: : :                                                    
CCDS65 AWGTPSTGTIPKEIPAWGQLHTQPEVEPQVDSPAPPRPSLQPHPRLLDHRDSVEQVAVLA
              320       330       340       350       360       370




229 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:27:39 2016 done: Sat Nov  5 14:27:40 2016
 Total Scan time:  2.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]