Result of FASTA (ccds) for
pF1KB6927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6927, 207 aa
1>>>pF1KB6927 207 - 207 aa - 207 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9259+/-0.000795; mu= 10.3657+/- 0.047
mean_var=94.8799+/-18.814, 0's: 0 Z-trim(109.5): 187 B-trim: 141 in 2/50
Lambda= 0.131670
statistics sampled from 10698 (10932) to 10698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.336), width: 16
Scan time: 1.740
The best scores are: opt bits E(32554)
CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19 ( 207) 1319 260.4 5.8e-70
CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11 ( 197) 1109 220.5 5.7e-58
CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12 ( 233) 1038 207.0 7.4e-54
CCDS77328.1 LIN7B gene_id:64130|Hs108|chr19 ( 137) 503 105.2 1.9e-23
CCDS73357.1 DLG2 gene_id:1740|Hs108|chr11 ( 852) 293 65.9 8.2e-11
CCDS41696.1 DLG2 gene_id:1740|Hs108|chr11 ( 870) 293 65.9 8.3e-11
CCDS44691.1 DLG2 gene_id:1740|Hs108|chr11 ( 749) 292 65.7 8.4e-11
CCDS55782.1 DLG2 gene_id:1740|Hs108|chr11 ( 909) 293 65.9 8.6e-11
CCDS44690.1 DLG2 gene_id:1740|Hs108|chr11 ( 975) 293 66.0 9.1e-11
>>CCDS12757.1 LIN7B gene_id:64130|Hs108|chr19 (207 aa)
initn: 1319 init1: 1319 opt: 1319 Z-score: 1369.5 bits: 260.4 E(32554): 5.8e-70
Smith-Waterman score: 1319; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KB6 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
130 140 150 160 170 180
190 200
pF1KB6 MEARFEKMRSARRRQQHQSYSSLESRG
:::::::::::::::::::::::::::
CCDS12 MEARFEKMRSARRRQQHQSYSSLESRG
190 200
>>CCDS7864.1 LIN7C gene_id:55327|Hs108|chr11 (197 aa)
initn: 1109 init1: 1109 opt: 1109 Z-score: 1154.3 bits: 220.5 E(32554): 5.7e-58
Smith-Waterman score: 1109; 84.7% identity (98.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KB6 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
:::: ::. ::::. ::.::::.::::::.::::::::::::::.::.:.:::::..:.:
CCDS78 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYIS
.::..: :.::.::::::::::.:::::.::::::::::.::::::::::::::::::::
CCDS78 VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
:.::::.::::::::::::::::::::::::.:::::::::::::.:::::::::.::::
CCDS78 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE
130 140 150 160 170 180
190 200
pF1KB6 MEARFEKMRSARRRQQHQSYSSLESRG
::.::::::::.::::
CCDS78 MESRFEKMRSAKRRQQT
190
>>CCDS9021.1 LIN7A gene_id:8825|Hs108|chr12 (233 aa)
initn: 1082 init1: 1028 opt: 1038 Z-score: 1080.3 bits: 207.0 E(32554): 7.4e-54
Smith-Waterman score: 1038; 78.5% identity (95.5% similar) in 200 aa overlap (1-198:14-213)
10 20 30 40
pF1KB6 MAAL--VEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSR
::.: :.:: :.:::.::.::::.::.:::.: .:::.:..::::.
CCDS90 MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 FCSAIREVYEQLYDTLDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGF
::.::::::. ...:. ..: :.::.::::::::::.:::::.::::::::::::::::
CCDS90 FCTAIREVYQYMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 NIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG
:.::::::::::::::.::::::.::::::::::::::::::::::.:::::::::::.
CCDS90 NVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKD
130 140 150 160 170 180
170 180 190 200
pF1KB6 SVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQSYSSLESRG
::::::::::.:::::::::::.:.::::::.:
CCDS90 SVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQLLIQQQQQQQQQQTQQNHMS
190 200 210 220 230
>>CCDS77328.1 LIN7B gene_id:64130|Hs108|chr19 (137 aa)
initn: 513 init1: 476 opt: 503 Z-score: 534.3 bits: 105.2 E(32554): 1.9e-23
Smith-Waterman score: 706; 66.2% identity (66.2% similar) in 207 aa overlap (1-207:1-137)
10 20 30 40 50 60
pF1KB6 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MAALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYIS
::::::::::::::::
CCDS77 LDITGSAEIRAHATAK--------------------------------------------
70
130 140 150 160 170 180
pF1KB6 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
::::::::::::::::::::::::::::::::::
CCDS77 --------------------------SVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEE
80 90 100 110
190 200
pF1KB6 MEARFEKMRSARRRQQHQSYSSLESRG
:::::::::::::::::::::::::::
CCDS77 MEARFEKMRSARRRQQHQSYSSLESRG
120 130
>>CCDS73357.1 DLG2 gene_id:1740|Hs108|chr11 (852 aa)
initn: 369 init1: 187 opt: 293 Z-score: 307.6 bits: 65.9 E(32554): 8.2e-11
Smith-Waterman score: 293; 38.5% identity (68.9% similar) in 148 aa overlap (61-202:384-526)
40 50 60 70 80
pF1KB6 PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH-----ATAKATVAAFTAS
: . ..:. .: :: . ... :
CCDS73 LCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAV
360 370 380 390 400 410
90 100 110 120 130 140
pF1KB6 EGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNG
...:: : : : . ::::::.:: :.. :..: .. :: :: : :.::::.:::::
CCDS73 SLEGEPRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNG
420 430 440 450 460 470
150 160 170 180 190 200
pF1KB6 VSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSSLE
....: .::.:. ::.: .: ....: : : :::: :... :......:.::
CCDS73 IDLRGASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSSGS
480 490 500 510 520
pF1KB6 SRG
CCDS73 GSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEG
530 540 550 560 570 580
>>CCDS41696.1 DLG2 gene_id:1740|Hs108|chr11 (870 aa)
initn: 369 init1: 187 opt: 293 Z-score: 307.5 bits: 65.9 E(32554): 8.3e-11
Smith-Waterman score: 293; 38.5% identity (68.9% similar) in 148 aa overlap (61-202:384-526)
40 50 60 70 80
pF1KB6 PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH-----ATAKATVAAFTAS
: . ..:. .: :: . ... :
CCDS41 LCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAV
360 370 380 390 400 410
90 100 110 120 130 140
pF1KB6 EGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNG
...:: : : : . ::::::.:: :.. :..: .. :: :: : :.::::.:::::
CCDS41 SLEGEPRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNG
420 430 440 450 460 470
150 160 170 180 190 200
pF1KB6 VSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSSLE
....: .::.:. ::.: .: ....: : : :::: :... :......:.::
CCDS41 IDLRGASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSSGS
480 490 500 510 520
pF1KB6 SRG
CCDS41 GSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEG
530 540 550 560 570 580
>>CCDS44691.1 DLG2 gene_id:1740|Hs108|chr11 (749 aa)
initn: 369 init1: 187 opt: 292 Z-score: 307.4 bits: 65.7 E(32554): 8.4e-11
Smith-Waterman score: 292; 39.4% identity (71.1% similar) in 142 aa overlap (62-202:288-423)
40 50 60 70 80 90
pF1KB6 PQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAHATAKATVAAFTASEGHAHP
: :. .. .. :: . ... : ...:
CCDS44 NNGTLEYKTSLPPISPGRYSPIPKHMLVDDDYTSHSQ-HSTATRQPSMTLQRAVSLEGEP
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB6 RVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE
: : : : . ::::::.:: :.. :..: .. :: :: : :.::::.:::::....:
CCDS44 RKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGA
320 330 340 350 360 370
160 170 180 190 200
pF1KB6 QHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSSLESRG
.::.:. ::.: .: ....: : : :::: :... :......:.::
CCDS44 SHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSSGSGSLRTN
380 390 400 410 420 430
CCDS44 QKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEGDSEEMG
440 450 460 470 480 490
>>CCDS55782.1 DLG2 gene_id:1740|Hs108|chr11 (909 aa)
initn: 369 init1: 187 opt: 293 Z-score: 307.2 bits: 65.9 E(32554): 8.6e-11
Smith-Waterman score: 293; 38.5% identity (68.9% similar) in 148 aa overlap (61-202:423-565)
40 50 60 70 80
pF1KB6 PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH-----ATAKATVAAFTAS
: . ..:. .: :: . ... :
CCDS55 LCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAV
400 410 420 430 440 450
90 100 110 120 130 140
pF1KB6 EGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNG
...:: : : : . ::::::.:: :.. :..: .. :: :: : :.::::.:::::
CCDS55 SLEGEPRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNG
460 470 480 490 500 510
150 160 170 180 190 200
pF1KB6 VSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSSLE
....: .::.:. ::.: .: ....: : : :::: :... :......:.::
CCDS55 IDLRGASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSSGS
520 530 540 550 560
pF1KB6 SRG
CCDS55 GSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEG
570 580 590 600 610 620
>>CCDS44690.1 DLG2 gene_id:1740|Hs108|chr11 (975 aa)
initn: 395 init1: 187 opt: 293 Z-score: 306.8 bits: 66.0 E(32554): 9.1e-11
Smith-Waterman score: 293; 38.5% identity (68.9% similar) in 148 aa overlap (61-202:489-631)
40 50 60 70 80
pF1KB6 PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH-----ATAKATVAAFTAS
: . ..:. .: :: . ... :
CCDS44 LCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAV
460 470 480 490 500 510
90 100 110 120 130 140
pF1KB6 EGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNG
...:: : : : . ::::::.:: :.. :..: .. :: :: : :.::::.:::::
CCDS44 SLEGEPRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNG
520 530 540 550 560 570
150 160 170 180 190 200
pF1KB6 VSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSSLE
....: .::.:. ::.: .: ....: : : :::: :... :......:.::
CCDS44 IDLRGASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSSGS
580 590 600 610 620 630
pF1KB6 SRG
CCDS44 GSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEG
640 650 660 670 680 690
207 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:07:17 2016 done: Fri Nov 4 12:07:17 2016
Total Scan time: 1.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]