Result of FASTA (ccds) for
pF1KB6922
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6922, 227 aa
1>>>pF1KB6922 227 - 227 aa - 227 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1675+/-0.000682; mu= 15.4316+/- 0.041
mean_var=69.7049+/-13.378, 0's: 0 Z-trim(110.6): 16 B-trim: 0 in 0/52
Lambda= 0.153618
statistics sampled from 11680 (11695) to 11680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.359), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS12249.1 TMED1 gene_id:11018|Hs108|chr19 ( 227) 1483 337.0 6e-93
CCDS743.1 TMED5 gene_id:50999|Hs108|chr1 ( 229) 814 188.7 2.6e-48
CCDS53342.1 TMED5 gene_id:50999|Hs108|chr1 ( 193) 552 130.6 6.8e-31
CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 188) 256 65.0 3.7e-11
CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 ( 224) 256 65.1 4.3e-11
CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 ( 404) 256 65.2 6.9e-11
>>CCDS12249.1 TMED1 gene_id:11018|Hs108|chr19 (227 aa)
initn: 1483 init1: 1483 opt: 1483 Z-score: 1782.2 bits: 337.0 E(32554): 6e-93
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KB6 MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEA
130 140 150 160 170 180
190 200 210 220
pF1KB6 RDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
190 200 210 220
>>CCDS743.1 TMED5 gene_id:50999|Hs108|chr1 (229 aa)
initn: 629 init1: 629 opt: 814 Z-score: 980.8 bits: 188.7 E(32554): 2.6e-48
Smith-Waterman score: 814; 58.1% identity (82.9% similar) in 210 aa overlap (16-223:17-225)
10 20 30 40 50
pF1KB6 MMAAGAALALALWLLMPPVEV-GGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLET
.::: . :.:: : :..::: ::::.:.:::: : .::::
CCDS74 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 EYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKL
::::. :::::.:: : ::.: :: :.::.::::::: ::.::: .::::.:::::::.
CCDS74 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVE-TEVGDYMFCFDNTFSTISEKV
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 VFFELIFDSLQDD-EEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRA
.:::::.:.. .. .: : : . . ..::.:.::: :::.....:: .: .. :::::
CCDS74 IFFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRA
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 FEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
:::::::.::.:..:::::: ::..:...:...:: :: .:.:::
CCDS74 FEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSRT
180 190 200 210 220
>>CCDS53342.1 TMED5 gene_id:50999|Hs108|chr1 (193 aa)
initn: 560 init1: 359 opt: 552 Z-score: 668.1 bits: 130.6 E(32554): 6.8e-31
Smith-Waterman score: 552; 57.9% identity (79.3% similar) in 145 aa overlap (16-158:17-160)
10 20 30 40 50
pF1KB6 MMAAGAALALALWLLMPPVEV-GGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLET
.::: . :.:: : :..::: ::::.:.:::: : .::::
CCDS53 MGDKIWLPFPVLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 EYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKL
::::. :::::.:: : ::.: :: :.::.::::::: ::.::: .::::.:::::::.
CCDS53 EYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVE-TEVGDYMFCFDNTFSTISEKV
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 VFFELIFDSLQDD-EEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRA
.:::::.:.. .. .: : : . . ..::.:.::: . :
CCDS53 IFFELILDNMGEQAQEQEDWKKYITGTDILDMKLEDILDPIIKIASDVQIRLHLGIHQQH
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 FEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
CCDS53 QVQTKQKWAHTNSA
180 190
>>CCDS54888.1 TICAM2 gene_id:100302736|Hs108|chr5 (188 aa)
initn: 260 init1: 240 opt: 256 Z-score: 313.7 bits: 65.0 E(32554): 3.7e-11
Smith-Waterman score: 268; 33.7% identity (55.6% similar) in 187 aa overlap (10-195:22-188)
10 20 30 40
pF1KB6 MMAAGAALALALWLLMP-PVEVGGAGPPPIQDGEFTFLLPAGRKQCFY
::: ::.: : :::. :.:: :: . :::::
CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGP---GGAS-------EITFELPDNAKQCFY
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 QSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCF
.. ... :.::: :. ::: ::.:.: .: .: .: : .. : ::.::
CCDS54 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 DNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLER
.: :::...: :.: : .: : . : : . ... . ... :.
CCDS54 SNEFSTFTHKTVYF---------DFQV-GEDPPLFPSENRVSALTQMESACVSIHEALKS
120 130 140 150 160
170 180 190 200 210 220
pF1KB6 SIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
:.. : .: ::. :. : :: .
CCDS54 VIDYQTHFRLREAQGRSRAEDLNTRVAY
170 180
>>CCDS4120.1 TMED7 gene_id:51014|Hs108|chr5 (224 aa)
initn: 372 init1: 246 opt: 256 Z-score: 312.6 bits: 65.1 E(32554): 4.3e-11
Smith-Waterman score: 362; 35.6% identity (58.4% similar) in 219 aa overlap (10-227:22-220)
10 20 30 40
pF1KB6 MMAAGAALALALWLLMP-PVEVGGAGPPPIQDGEFTFLLPAGRKQCFY
::: ::.: : :::. :.:: :: . :::::
CCDS41 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGP---GGAS-------EITFELPDNAKQCFY
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 QSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCF
.. ... :.::: :. ::: ::.:.: .: .: .: : .. : ::.::
CCDS41 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 DNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLER
.: :::...: :.: : .: : . : : . ... . ... :.
CCDS41 SNEFSTFTHKTVYF---------DFQV-GEDPPLFPSENRVSALTQMESACVSIHEALKS
120 130 140 150 160
170 180 190 200 210 220
pF1KB6 SIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
:.. : .: ::. :. : :: .::. .. .::.:.. :: :: ::.::: . :
CCDS41 VIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTT
170 180 190 200 210 220
CCDS41 RVGS
>>CCDS54887.1 TICAM2 gene_id:100302736|Hs108|chr5 (404 aa)
initn: 288 init1: 240 opt: 256 Z-score: 309.0 bits: 65.2 E(32554): 6.9e-11
Smith-Waterman score: 291; 33.5% identity (56.7% similar) in 194 aa overlap (10-202:22-195)
10 20 30 40
pF1KB6 MMAAGAALALALWLLMP-PVEVGGAGPPPIQDGEFTFLLPAGRKQCFY
::: ::.: : :::. :.:: :: . :::::
CCDS54 MPRPGSAQRWAAVAGRWGCRLLALLLLVPGP---GGAS-------EITFELPDNAKQCFY
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 QSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCF
.. ... :.::: :. ::: ::.:.: .: .: .: : .. : ::.::
CCDS54 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 DNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLER
.: :::...: :.: : .: : . : : . ... . ... :.
CCDS54 SNEFSTFTHKTVYF---------DFQV-GEDPPLFPSENRVSALTQMESACVSIHEALKS
120 130 140 150 160
170 180 190 200 210 220
pF1KB6 SIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
:.. : .: ::. :. : :: .: .:...
CCDS54 VIDYQTHFRLREAQGRSRAEDLNTRVAYWHSVDTSPGYHESDSKKSEDLSLCNVAEHSNT
170 180 190 200 210 220
CCDS54 TEGPTGKQEGAQSVEEMFEEEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGII
230 240 250 260 270 280
227 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:24:00 2016 done: Sat Nov 5 14:24:00 2016
Total Scan time: 2.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]